Dmel\gypsy6

General Information
Symbol	Dmel\gypsy6	Species	D.melanogaster
Name	gypsy6	FlyBase ID	FBte0001175
Feature type	natural transposable element
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Sequences & Components
Complete element (bp)	7826 (Kaminker et al., 2002)
Terminal repeat (bp)
Reference sequence	transposon_sequence_set.embl.txt.gz
Component genes
Sequence Accessions
	DDBJ/EMBL/GenBank
Sequence Ontology (SO)
Transposon type	LTR_retrotransposon (Kaminker et al., 2002, Kapitonov and Jurka, 1997-) transposable_element (Kaminker et al., 2002, Kapitonov and Jurka, 1997-)
Insertions & Copy Number
Copy number and comments	1 in euchromatin of Release 3 genome annotation. (Kaminker et al., 2002)
Search for	All insertions of this transposon Insertions in the sequenced genome Insertions in other genomes
Target Site Duplication
Size (bp)
Orthologs
Curated drosophilid orthologs
Comments

Other Information
Etymology

External Crossreferences
Sequence Crossreferences
	DDBJ/EMBL/GenBank
Other Crossreferences

Synonyms & Secondary IDs ( 5 )
Reported As
Symbol Synonym	Gypsy (Rozhkov et al., 2010) gypsy6 (FlyBase, 1992-, Ganko et al., 2006, Pane et al., 2011, Lau et al., 2009, Brennecke et al., 2007, Liu et al., 2011, Brennecke et al., 2008, Czech et al., 2008, Kawamura et al., 2008, Malone et al., 2009, Li et al., 2009, Sienski et al., 2012) Gypsy6 (Wang and Elgin, 2011) GYPSY6 (Vujatovic et al., 2012) GYPSY6_I (Gunawardane et al., 2007)
Name Synonym	gypsy6
Secondary FlyBase IDs
	FBgn0047357 FBgn0063431 FBtp0017063
References ( 22 )

Generate a list of	All references relating to this natural transposable element ( 22 )

List References by type	Research paper ( 18 ) Supplementary material ( 1 ) Personal communication to FlyBase ( 2 ) FlyBase analysis ( 1 )
Recent research papers ( 5 )
	Sienski et al., 2012, Cell 151(5): 964--980 Transcriptional silencing of transposons by piwi and maelstrom and its impact on chromatin state and gene expression. [FBrf0220033] Vujatovic et al., 2012, Nucleic Acids Res. 40(12): 5402--5414 Drosophila melanogaster linker histone dH1 is required for transposon silencing and to preserve genome integrity. [FBrf0218745] Liu et al., 2011, Development 138(9): 1863--1873 PAPI, a novel TUDOR-domain protein, complexes with AGO3, ME31B and TRAL in the nuage to silence transposition. [FBrf0213491] Pane et al., 2011, EMBO J. 30(22): 4601--4615 The Cutoff protein regulates piRNA cluster expression and piRNA production in the Drosophila germline. [FBrf0217070] Wang and Elgin, 2011, Proc. Natl. Acad. Sci. U.S.A. 108(52): 21164--21169 Drosophila Piwi functions downstream of piRNA production mediating a chromatin-based transposon silencing mechanism in female germ line. [FBrf0217081] Show all research papers ...