Dmel\Transpac

General Information
Symbol	Dmel\Transpac	Species	D.melanogaster
Name	Transpac	FlyBase ID	FBte0001377
Feature type	natural transposable element
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Sequences & Components
Complete element (bp)	5.5kb 5249 (Kaminker et al., 2002)
Terminal repeat (bp)
Reference sequence	transposon_sequence_set.embl.txt.gz
Component genes	Transpac\gag Transpac\pol
Sequence Accessions
	DDBJ/EMBL/GenBank AF222049
Sequence Ontology (SO)
Transposon type	LTR_retrotransposon (Kaminker et al., 2002, Long, 2000.1.7, Mugnier et al., 2008) transposable_element (Kaminker et al., 2002, Long, 2000.1.7, Mugnier et al., 2008)
Insertions & Copy Number
Copy number and comments	5 in euchromatin of Release 3 genome annotation, all full length. (Kaminker et al., 2002) TE copies retrieved from release 5.1 of the D. melanogaster genome.:5 (Lerat et al., 2011)
Search for	All insertions of this transposon Insertions in the sequenced genome Insertions in other genomes
Target Site Duplication
Size (bp)	4 (Linheiro and Bergman, 2012)
Orthologs
Curated drosophilid orthologs	Dsim\coral (Vieira et al., 1999)
Comments
	A retrotransposon identified as causing the mutant phenotype of w^co. (Csink et al., 1994) 5.5kb retrotransposon. (Csink et al., 1994)
Other Information
Etymology

External Crossreferences
Sequence Crossreferences
	DDBJ/EMBL/GenBank AF222049
Other Crossreferences

Synonyms & Secondary IDs ( 5 )
Reported As
Symbol Synonym	CG15054 (Bolshakov et al., 2002, Misra, 2001.7.31, ) coral (Lerat et al., 2011, ) Transpac (Zhang et al., 2011, Ganko et al., 2006, Linheiro and Bergman, 2012, Nefedova and Kim, 2007, Pane et al., 2011, Petrov et al., 2011, Nefedova et al., 2011, Gruber et al., 2007, Deloger et al., 2009, Bergman and Bensasson, 2007, Li et al., 2009, Lu and Clark, 2010, Franchini et al., 2004, Sienski et al., 2012) transpac (Lerat et al., 2011, Bowen and McDonald, 2001, Misra, 2001.7.31, Mugnier et al., 2008, Brennecke et al., 2008, Malone et al., 2009)
Name Synonym	coral element (Csink et al., 1994) Transpac transpac (Mugnier et al., 2008)
Secondary FlyBase IDs
	FBgn0014953 FBgn0040267 FBgn0040880 FBte0000374 FBte0000645 FBtp0011421 FBtp0012712
References ( 32 )

Generate a list of	All references relating to this natural transposable element ( 32 )

List References by type	Research paper ( 29 ) Personal communication to FlyBase ( 1 ) FlyBase analysis ( 1 ) DNA/RNA sequence record ( 1 )
Recent research papers ( 7 )
	Linheiro and Bergman, 2012, PLoS ONE 7(2): e30008 Whole Genome Resequencing Reveals Natural Target Site Preferences of Transposable Elements in Drosophila melanogaster. [FBrf0217478] Sienski et al., 2012, Cell 151(5): 964--980 Transcriptional silencing of transposons by piwi and maelstrom and its impact on chromatin state and gene expression. [FBrf0220033] Lerat et al., 2011, Gene 473(2): 100--109 Comparative analysis of transposable elements in the melanogaster subgroup sequenced genomes. [FBrf0212990] Nefedova et al., 2011, Virus Genes 42(2): 297--306 Integration specificity of LTR-retrotransposons and retroviruses in the Drosophila melanogaster genome. [FBrf0213545] Pane et al., 2011, EMBO J. 30(22): 4601--4615 The Cutoff protein regulates piRNA cluster expression and piRNA production in the Drosophila germline. [FBrf0217070] Petrov et al., 2011, Mol. Biol. Evol. 28(5): 1633--1644 Population genomics of transposable elements in Drosophila melanogaster. [FBrf0214125] Zhang et al., 2011, Mol. Cell 44(4): 572--584 Heterotypic piRNA Ping-Pong Requires Qin, a Protein with Both E3 Ligase and Tudor Domains. [FBrf0216809] Show all research papers ...