A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Dmel\P{PZ}5SrRNA03068 Insertion

General Information
Symbol Dmel\P{PZ}5SrRNA03068 Species D. melanogaster
Name FlyBase ID FBti0004438
Feature type transposable_element_insertion_site
Description
Inserted element P{PZ} Expression data lacZ reporter
Affected gene(s) 5SrRNA, Ecol\lacZ Viability / fertility
Causes allele(s) 5SrRNA03068, Ecol\lacZ5SRNA-03068 Stock availability 1 publicly available
LINE ID l(2)03068
Genomic Location
Chromosomal location 2R ( 56E2 ) Sequence location 2R:15,617,000..15,653,800
Map ( GBrowse ) detailed view FBti0018966 FBti0018940 FBti0125308_2 FBti0125308_1 FBti0035260 FBti0029837 FBti0033432 FBti0107270 FBti0107609 FBti0072126 FBti0021527 FBti0106123 FBti0004438 FBti0106573 FBti0125309 FBti0125310 FBti0131564 FBti0052053 FBti0113586
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
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This section does not currently display links that were removed or gene model changes.
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FB2012_01
FB2011_10
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hide Detailed Mapping Data
Chromosome (arm)
Sequence Location
2R:15,617,000..15,653,800
(FlyBase, 1996-)
Orientation
-
(Levis R., 2009.03.30)
Cytological location
(computed by FlyBase)
56E2 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
56F1-56F2 (in situ hybridization reported)
(BDGP Project Members, 1994-1999)
Comments concerning
location
hide Sequence Data
Flanking sequence
AQ025605
(FlyBase, 1992-,  
hide Inserted Element
Construct P{PZ}
Location-dependent
role
lacZ enhancer trap
(Mlodzik and Hiromi, 1992)
Size 14.545Kb
Associated alleles
Ecol\lacZP\T.PZ
l(3)87Df7.2
ry+t7.2
Molecular map
hide Affected Gene(s)
Insertion may
affect gene
5SrRNA
(Keshishian et al., 1993)
Ecol\lacZ
(Keshishian et al., 1993, Vosshall, 1998.8.10, Jackle and Janning, 1998.8.10)
hide Alleles and Phenotypes
Causes alleles
5SrRNA03068
(BDGP Project Members, 1994-1999, Liu and Restifo, 1998, Spradling et al., 1999)
Ecol\lacZ5SRNA-03068
(Keshishian et al., 1993, Vosshall, 1998.8.10, Jackle and Janning, 1998.8.10)
Lethality
References
lethal | recessive
(Spradling et al., 1999)
semi-lethal
 
semi-lethal | recessive
(Liu and Restifo, 1998)
Sterility
References
hide Phenotype Manifest In
hide Detailed Description
Statement
Reference
hide Expression Data
Reporter Expression
Additional Information
Statement
Reference
In wandering third instar larva, no detectable β-gal staining.
(Meister and Braun, 1995.10)
Marker for
Reflects
expression of
hide External Images
FlyView (LinkOut)
hide Data on Genetic Line
Line ID
l(2)03068
(Gene Disruption Project members, 2001-)
Origin as a multiple insertion line
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 1 )
Bloomington
11265
cn1 P{PZ}5SrRNA03068/CyO; ry506
hide Linkouts
hide Comments
Error in previous genomic location reported in FlyBase (2R:15,196,621, r5): original sequence location data reported for release 3 genomic sequence; FlyBase error in promotion to subsequent releases.
(Levis R., 2009.03.30)
Maps within a 5SrRNA gene in the cluster at 56EF; cannot determine to which specific 5SrRNA gene.
(FlyBase, 1996-)
hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
l(2)03068
(Levis R., 2009.03.30)
P1265
(Meister and Braun, 1995.10)
P{lacZ}3068
(Keshishian et al., 1993, FlyBase, 1992-)
P{PZ}5SRNA03068
(FlyBase, 1992-)
P{PZ}5SrRNA03068
(FlyBase, 1992-)
P{PZ}l(2)0306803068
(Keshishian et al., 1993, FlyBase, 1992-)
P{ry+t7.2=PZ}l(2)0306803068
(FlyBase, 1992-)
Secondary FlyBase IDs
  • FBti0000307
  • FBti0009552
hide References ( 13 )
Research paper
Bellen et al., 2004, Genetics 167(2): 761--781
The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. [FBrf0179132]
Spradling et al., 1999, Genetics 153(1): 135--177
The Berkeley Drosophila genome project gene disruption project. Single P-element insertions mutating 25% of vital Drosophila genes. [FBrf0111489]
Liu and Restifo, 1998, J. Neurobiol. 34(3): 253--270
Identification of a broad complex-regulated enhancer in the developing visual system of Drosophila. [FBrf0100595]
Keshishian et al., 1993, J. Neurobiol. 24(6): 757--787
Cellular mechanisms governing synaptic development in Drosophila melanogaster. [FBrf0058902]
Mlodzik and Hiromi, 1992, Conn, 1992: 397--414
Enhancer trap method in Drosophila: its application to neurobiology. [FBrf0066714]
Personal communication to FlyBase
Levis R., 2009.03.30, Additional mapped insertions (release 3 coordinates).
Additional mapped insertions (release 3 coordinates). [FBrf0207436]
Jackle and Janning, 1998.8.10, Patterns of lacZ expression.
Patterns of lacZ expression. [FBrf0103143]
Vosshall, 1998.8.10, Patterns of lacZ expression.
Patterns of lacZ expression. [FBrf0103142]
Meister and Braun, 1995.10, lacZ expression patterns for P{} insertions at Bloomington.
lacZ expression patterns for P{} insertions at Bloomington. [FBrf0083714]
FlyBase analysis
FlyBase, 1996-, FlyBase inference based on genome sequence analysis.
FlyBase inference based on genome sequence analysis. [FBrf0104946]
FlyBase, 1992-, FlyBase curation
FlyBase curation. [FBrf0105495]
Computer file
Gene Disruption Project members, 2001-, [title not yet available]
[title not yet available] [FBrf0132177]
BDGP Project Members, 1994-1999, Berkeley Drosophila Genome Project.
Berkeley Drosophila Genome Project. [FBrf0067338]