A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Dmel\P{EP}svrEP356 Insertion

General Information
Symbol Dmel\P{EP}svrEP356 Species D. melanogaster
Name FlyBase ID FBti0007296
Feature type transposable_element_insertion_site
Description
Inserted element P{EP} Expression data
Affected gene(s) svr Viability / fertility viable
Causes allele(s) svrEP356 Stock availability 1 publicly available
LINE ID EP(X)0356
Genomic Location
Chromosomal location X ( 1B6 ) Sequence location X:393,386..393,386 [+]
Map ( GBrowse ) detailed view FBti0068308 FBti0056580 FBti0011862 FBti0107703 FBti0031236 FBti0028786 FBti0011898 FBti0070476 FBti0021771 FBti0056122 FBti0037330 FBti0071751 FBti0049183 FBti0068482 FBti0021219 FBti0050574 FBti0034682 FBti0069382 FBti0058891 FBti0007296 FBti0035543 FBti0071749 FBti0055591 FBti0028294 FBti0069190 FBti0069575 FBti0071531 FBti0024461 FBti0034591 FBti0054862 FBti0069579 FBti0048891 FBti0048929 FBti0049786
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2012_01
FB2011_10
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hide Detailed Mapping Data
Chromosome (arm)
Sequence Location
X:393,386..393,386 [+]
(BDGP Project Members, 2000-)
Orientation
Cytological location
(computed by FlyBase)
1B6 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
1B3-1B3 (reported as inferred from sequence location)
(BDGP Project Members, 2000-)
1B7-1B8 (in situ hybridization reported)
(BDGP Project Members, 1994-1999)
1B7-1B8 (in situ hybridization reported)
(Spradling, 1997.8.22)
Comments concerning
location
hide Sequence Data
Flanking sequence
AQ025323
(Benos et al., 2001, FlyBase, 1992-,  
hide Inserted Element
Construct P{EP}
Location-dependent
role
mobile activating element (UASG)
(Rorth, 1996)
Size 7.987Kb
Associated alleles
Scer\UAS14x.hs
TrlBRcRa
w+mC
Molecular map
hide Affected Gene(s)
Insertion may
affect gene
svr
(BDGP Project Members, 2000-, Cao et al., 2008)
hide Alleles and Phenotypes
Causes alleles
svrEP356
(Benos et al., 2001, Pena-Rangel et al., 2002, Gene Disruption Project members, 2001-, Bayraktaroglu, 2001.6.13, Cao et al., 2008)
Lethality
References
viable
(Spradling, 1997.8.22)
Sterility
References
hide Phenotype Manifest In
hide Detailed Description
Statement
Reference
Expression using Scer\GAL4[ey.PU] does not induce a rough eye phenotype.
(Cao et al., 2008)
hide Expression Data
Reporter Expression
Additional Information
Statement
Reference
Marker for
Reflects
expression of
hide External Images
FlyView (LinkOut)
hide Data on Genetic Line
Line ID
EP(X)0356
(Gene Disruption Project members, 2001-)
Origin as a multiple insertion line
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 1 )
Bloomington
10042
P{EP}svrEP356 w1118
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hide Comments
Location X:356175-356176 confirmed by FlyBase alignment of dbGSS accession AQ025323 to D. melanogaster arm Release_4 and heterochromatin Release_3.2b. Insertion orientation confirmed.
(FlyBase, 2005)
Maps to clone: 171D11
(Benos et al., 2001)
hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
EP356
(Sass et al., 2003)
EP(1)0356
(Benos et al., 2001)
ep(x)0356
(FlyBase, 1992-)
P{EP}EP356
(FlyBase, 1992-)
P{EP}svrEP356
(FlyBase, 2005, FlyBase, 1992-)
P{w}EP356
(Spradling, 1997.8.22)
svrEP(X)0356
(Cao et al., 2008)
Secondary FlyBase IDs
hide References ( 14 )
Research paper
Cao et al., 2008, Genetics 178(3): 1457--1471
Identification of novel genes that modify phenotypes induced by Alzheimer's beta-amyloid overexpression in Drosophila. [FBrf0205107]
Bellen et al., 2004, Genetics 167(2): 761--781
The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. [FBrf0179132]
Sass et al., 2003, Proc. Natl. Acad. Sci. USA 100(14): 8287--8291
Male-specific lethal complex of Drosophila targets activated regions of the X chromosome for chromatin remodeling. [FBrf0159712]
Pena-Rangel et al., 2002, Genetics 160(3): 1035--1050
A misexpression study examining dorsal thorax formation in Drosophila melanogaster. [FBrf0147055]
Benos et al., 2001, Genome Res. 11(5): 710--730
From First Base: the sequence of the tip of the X chromosome of Drosophila melanogaster, a comparison of two sequencing strategies. [FBrf0135823]
Spradling et al., 1999, Genetics 153(1): 135--177
The Berkeley Drosophila genome project gene disruption project. Single P-element insertions mutating 25% of vital Drosophila genes. [FBrf0111489]
Rorth, 1996, Proc. Natl. Acad. Sci. USA 93(22): 12418--12422
A modular misexpression screen in Drosophila detecting tissue-specific phenotypes. [FBrf0090768]
Personal communication to FlyBase
Bayraktaroglu, 2001.6.13, P{EP}EP356 can be curated as an allele of svr.
P{EP}EP356 can be curated as an allele of svr. [FBrf0136785]
Spradling, 1997.8.22, EP lines from BDGP.
EP lines from BDGP. [FBrf0100829]
FlyBase analysis
FlyBase, 2005, Assessment of transgenic construct insertion sites.
Assessment of transgenic construct insertion sites. [FBrf0184339]
FlyBase, 1992-, FlyBase curation
FlyBase curation. [FBrf0105495]
Computer file
Gene Disruption Project members, 2001-, [title not yet available]
[title not yet available] [FBrf0132177]
BDGP Project Members, 2000-, Berkeley Drosophila Genome Project.
Berkeley Drosophila Genome Project. [FBrf0125078]
BDGP Project Members, 1994-1999, Berkeley Drosophila Genome Project.
Berkeley Drosophila Genome Project. [FBrf0067338]