A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Dmel\P{EP}EP427 Insertion

General Information
Symbol Dmel\P{EP}EP427 Species D. melanogaster
Name FlyBase ID FBti0007311
Feature type transposable_element_insertion_site
Description
Inserted element P{EP} Expression data
Affected gene(s) CG4406, Hr4 Viability / fertility viable, fertile
Causes allele(s) Stock availability 1 publicly available
LINE ID EP(X)0427
Genomic Location
Chromosomal location X ( 2C1 ) Sequence location X:1,904,060..1,904,060 [-]
Map ( GBrowse ) detailed view FBti0053808 FBti0053714 FBti0023232 FBti0007311 FBti0035563 FBti0035661 FBti0058834 FBti0132281 FBti0102482 FBti0056226 FBti0077017 FBti0071675 FBti0102463 FBti0110600 FBti0107706 FBti0028828 FBti0059451 FBti0126796_1 FBti0126796_2 FBti0057198 FBti0039759 FBti0035633 FBti0021834 FBti0072031 FBti0036736 FBti0035677 FBti0108524 FBti0036686 FBti0013229 FBti0033984 FBti0015627 FBti0027365
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Description
What does this section display?
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FB2011_10
FB2012_01
Genes
Hr4
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
Chromosome (arm)
Sequence Location
X:1,904,060..1,904,060 [-]
(BDGP Project Members, 2000-)
Orientation
Cytological location
(computed by FlyBase)
2C1 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
2B1-2B1 (reported as inferred from sequence location)
(BDGP Project Members, 2000-)
2C1-2C2 (in situ hybridization reported)
(BDGP Project Members, 1994-1999)
2C1-2C2 (in situ hybridization reported)
(Spradling, 1997.8.22)
Comments concerning
location
hide Sequence Data
Flanking sequence
AQ025337
(Benos et al., 2001, FlyBase, 1992-,  
hide Inserted Element
Construct P{EP}
Location-dependent
role
mobile activating element (UASG)
(Rorth, 1996)
Size 7.987Kb
Associated alleles
Scer\UAS14x.hs
TrlBRcRa
w+mC
Molecular map
hide Affected Gene(s)
Insertion may
affect gene
CG4406
(BDGP Project Members, 2000-, Benos et al., 2001)
Hr4
(King-Jones et al., 2005)
hide Alleles and Phenotypes
Causes alleles
Lethality
References
viable
(Spradling, 1997.8.22, King-Jones et al., 2005)
Sterility
References
fertile
(King-Jones et al., 2005)
hide Phenotype Manifest In
hide Detailed Description
Statement
Reference
hide Expression Data
Reporter Expression
Additional Information
Statement
Reference
Marker for
Reflects
expression of
hide External Images
FlyView (LinkOut)
hide Data on Genetic Line
Line ID
EP(X)0427
(Gene Disruption Project members, 2001-)
Origin as a multiple insertion line
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 1 )
Bloomington
10081
P{EP}EP427 w1118
hide Linkouts
hide Comments
Location X:1866183-1866184 confirmed by FlyBase alignment of dbGSS accession AQ025337 to D. melanogaster arm Release_4 and heterochromatin Release_3.2b. Insertion orientation confirmed.
(FlyBase, 2005)
Maps to clone: 133E12
(Benos et al., 2001)
hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
EP427
(King-Jones et al., 2005)
EP(1)0427
(Benos et al., 2001)
ep(x)0427
(FlyBase, 1992-)
EP(X)0427
(FlyBase, 1992-)
P427
(King-Jones et al., 2005)
P{EP}EP427
(FlyBase, 2005, FlyBase, 1992-)
P{w}EP427
(Spradling, 1997.8.22)
Secondary FlyBase IDs
hide References ( 11 )
Research paper
King-Jones et al., 2005, Cell 121(5): 773--784
The ecdysone-induced DHR4 orphan nuclear receptor coordinates growth and maturation in Drosophila. [FBrf0187229]
Bellen et al., 2004, Genetics 167(2): 761--781
The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. [FBrf0179132]
Benos et al., 2001, Genome Res. 11(5): 710--730
From First Base: the sequence of the tip of the X chromosome of Drosophila melanogaster, a comparison of two sequencing strategies. [FBrf0135823]
Spradling et al., 1999, Genetics 153(1): 135--177
The Berkeley Drosophila genome project gene disruption project. Single P-element insertions mutating 25% of vital Drosophila genes. [FBrf0111489]
Rorth, 1996, Proc. Natl. Acad. Sci. USA 93(22): 12418--12422
A modular misexpression screen in Drosophila detecting tissue-specific phenotypes. [FBrf0090768]
Personal communication to FlyBase
Spradling, 1997.8.22, EP lines from BDGP.
EP lines from BDGP. [FBrf0100829]
FlyBase analysis
FlyBase, 2005, Assessment of transgenic construct insertion sites.
Assessment of transgenic construct insertion sites. [FBrf0184339]
FlyBase, 1992-, FlyBase curation
FlyBase curation. [FBrf0105495]
Computer file
Gene Disruption Project members, 2001-, [title not yet available]
[title not yet available] [FBrf0132177]
BDGP Project Members, 2000-, Berkeley Drosophila Genome Project.
Berkeley Drosophila Genome Project. [FBrf0125078]
BDGP Project Members, 1994-1999, Berkeley Drosophila Genome Project.
Berkeley Drosophila Genome Project. [FBrf0067338]