Dmel\P{EP}CG3638^EP1090 Insertion

General Information
Symbol	Dmel\P{EP}CG3638^EP1090	Species	D. melanogaster
Name		FlyBase ID	FBti0007365
Feature type	transposable_element_insertion_site
Description
Inserted element	P{EP}	Expression data
Affected gene(s)	CG3638, CG11403	Viability / fertility	viable
Causes allele(s)	CG3638^EP1090	Stock availability	none publicly available
LINE ID	EP(X)1090
Genomic Location
Chromosomal location	X ( 1E5 )	Sequence location	X:1,129,173..1,129,173 [+]
Map ( GBrowse )
Member of Large Scale Dataset(s)
Dataset	TI_set_P{EP}.EP A set of transgenic insertion stocks derived by TE mobilization using the P-element construct P{EP}. The P{EP} construct construct carries a w[+mC] mini-white visible marker, Scer\UAS binding sites for the Scer\GAL4 transcriptional regulator, and bacterial sequences that allow plasmid rescue. The GAL4-UAS system allows regulated expression of genes proximate to the site of the insertion: genes properly oriented with respect to the Scer\UAS sequences can be conditionally expressed via transgene-derived Scer\GAL4 activity. Insertion lines from this collection were mapped and assessed for inclusion in the Gene Disruption Project collection; flanking sequence data were submitted to GenBank. (Rorth, 1996, Bellen et al., 2004)
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
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Detailed Mapping Data
Chromosome (arm)	1 (BDGP Project Members, 1994-1999)
Sequence Location	X:1,129,173..1,129,173 [+] (BDGP Project Members, 2000-)
Orientation
Cytological location (computed by FlyBase)	1E5 ( inferred by FlyBase from sequence location )
Cytological location (reported)	1D1-1D1 (reported as inferred from sequence location) (BDGP Project Members, 2000-) 1E3-1E4 (in situ hybridization reported) (BDGP Project Members, 1994-1999) 1E3-1E4 (in situ hybridization reported) (Spradling, 1997.8.22)
Comments concerning location
Sequence Data
Flanking sequence	AQ025382 (Benos et al., 2001, FlyBase, 1992-,
Inserted Element
Construct	P{EP}
Location-dependent role	mobile activating element (UASG) (Rorth, 1996)
Size	7.987Kb
Associated alleles	Scer\UAS^14x.hs TrlBR^cRa w^+mC
Molecular map
Affected Gene(s)
Insertion may affect gene	CG3638 (Benos et al., 2001, FlyBase Curators, 2008) CG11403 (BDGP Project Members, 2000-)
Alleles and Phenotypes
Causes alleles	CG3638^EP1090 (FlyBase Curators, 2008)

Lethality References viable (Spradling, 1997.8.22)
Sterility References
Phenotype Manifest In

Detailed Description
Statement Reference
Expression Data
Reporter Expression

Additional Information
Statement Reference

Marker for
Reflects expression of
Reporter construct used in assay
External Images
FlyView (LinkOut)
Data on Genetic Line
Line ID	EP(X)1090 (Gene Disruption Project members, 2001-)
Origin as a multiple insertion line
Progenitor(s) within the Genome

Related Aberration or Balancer
Aberration
Balancer
Stocks ( 0 )

Linkouts
Comments
	Location X:1091961-1091962 confirmed by FlyBase alignment of dbGSS accession AQ025382 to D. melanogaster arm Release_4 and heterochromatin Release_3.2b. Insertion orientation confirmed. (FlyBase, 2005) Maps to clone: 33C11 (Benos et al., 2001) insertion of mobile activating element (BDGP Project Members, 1994-1999)
Synonyms & Secondary IDs
Reported As
Symbol Synonym	EP(1)1090 (Benos et al., 2001) ep(x)1090 (FlyBase, 1992-) EP(X)1090 (FlyBase, 1992-) P{EP} (FlyBase, 1992-) P{EP}CG3638^EP1090 P{EP}EP1090 (FlyBase, 2005, FlyBase, 1992-) P{w} (Spradling, 1997.8.22)
Secondary FlyBase IDs
	FBti0007362
References ( 11 )
Research paper	Bellen et al., 2004, Genetics 167(2): 761--781 The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. [FBrf0179132] Benos et al., 2001, Genome Res. 11(5): 710--730 From First Base: the sequence of the tip of the X chromosome of Drosophila melanogaster, a comparison of two sequencing strategies. [FBrf0135823] Rorth, 1996, Proc. Natl. Acad. Sci. U.S.A. 93(22): 12418--12422 A modular misexpression screen in Drosophila detecting tissue-specific phenotypes. [FBrf0090768]
Personal communication to FlyBase	Gene Disruption Project members, 2001-, (Computer file) (Computer file) [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078] Spradling, 1997.8.22, EP lines from BDGP. EP lines from BDGP. [FBrf0100829] BDGP Project Members, 1994-1999, BDGP Project Members, 1994-1999, Berkeley Drosophila Genome Project. (Computer file) BDGP Project Members, 1994-1999, Berkeley Drosophila Genome Project. (Computer file) [FBrf0067338]
FlyBase analysis	FlyBase Curators, 2013, Members of TE insertion collections. Members of TE insertion collections. [FBrf0220668] FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955] FlyBase, 2005, Assessment of transgenic construct insertion sites. Assessment of transgenic construct insertion sites. [FBrf0184339] FlyBase, 1992-, FlyBase curation. FlyBase curation. [FBrf0105495]

Dmel\P{EP}CG3638EP1090 Insertion

Dmel\P{EP}CG3638^EP1090 Insertion