A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Dmel\P{EP}trolEP1160 Insertion

General Information
Symbol Dmel\P{EP}trolEP1160 Species D. melanogaster
Name FlyBase ID FBti0007380
Feature type transposable_element_insertion_site
Description
Inserted element P{EP} Expression data
Affected gene(s) trol Viability / fertility
Causes allele(s) trolEP1160 Stock availability 1 publicly available
LINE ID EP(X)1160
Genomic Location
Chromosomal location X ( 3A4 ) Sequence location X:2,412,143..2,412,143 [-]
Map ( GBrowse ) detailed view FBti0143665 FBti0058532 FBti0038207 FBti0038213 FBti0130238 FBti0038212 FBti0012844 FBti0034117 FBti0013894 FBti0059249 FBti0071532 FBti0111828 FBti0013913 FBti0071801 FBti0013953 FBti0036300 FBti0033475 FBti0021953 FBti0104819 FBti0007380 FBti0013150 FBti0013176
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
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FB2012_01
FB2011_10
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hide Detailed Mapping Data
Chromosome (arm)
1
(BDGP Project Members, 1994-1999)
Sequence Location
X:2,412,143..2,412,143 [-]
(BDGP Project Members, 2000-)
Orientation
Cytological location
(computed by FlyBase)
3A4 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
3A3-3A4 (in situ hybridization reported)
(BDGP Project Members, 1994-1999)
3A4-3A4 (reported as inferred from sequence location)
(BDGP Project Members, 2000-)
Comments concerning
location
hide Sequence Data
Flanking sequence
AQ025397
(Benos et al., 2001, FlyBase, 1992-,  
hide Inserted Element
Construct P{EP}
Location-dependent
role
mobile activating element (UASG)
(Rorth, 1996)
Size 7.987Kb
Associated alleles
Scer\UAS14x.hs
TrlBRcRa
w+mC
Molecular map
hide Affected Gene(s)
Insertion may
affect gene
trol
(Voigt et al., 2002, BDGP Project Members, 2000-, FlyBase Curators, 2008)
hide Alleles and Phenotypes
Causes alleles
trolEP1160
(Voigt et al., 2002, FlyBase Curators, 2008)
Lethality
References
viable
(Voigt et al., 2002)
Sterility
References
fertile
(Voigt et al., 2002)
hide Phenotype Manifest In
hide Detailed Description
Statement
Reference
hide Expression Data
Reporter Expression
Additional Information
Statement
Reference
Marker for
Reflects
expression of
hide External Images
FlyView (LinkOut)
hide Data on Genetic Line
Line ID
EP(X)1160
(Gene Disruption Project members, 2001-)
Origin as a multiple insertion line
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 1 )
Bloomington
11007
P{EP}trolEP1160 w1118
hide Linkouts
hide Comments
Location X:2374266-2374267 confirmed by FlyBase alignment of dbGSS accession AQ025397 to D. melanogaster arm Release_4 and heterochromatin Release_3.2b. Insertion orientation confirmed.
(FlyBase, 2005)
Maps to clone: BACR25B3
(Benos et al., 2001)
insertion of mobile activating element
(BDGP Project Members, 1994-1999)
hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
EP(1)1160
(Benos et al., 2001, Voigt et al., 2002)
ep(x)1160
(FlyBase, 1992-)
EP(X)1160
(FlyBase, 1992-)
P{EP}EP1160
(FlyBase, 2005, FlyBase, 1992-)
P{EP}trolEP1160
(FlyBase, 1992-)
Secondary FlyBase IDs
hide References ( 11 )
Research paper
Bellen et al., 2004, Genetics 167(2): 761--781
The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. [FBrf0179132]
Voigt et al., 2002, Dev. Dynamics 224(4): 403--412
Perlecan participates in proliferation activation of quiescent Drosophila neuroblasts. [FBrf0151905]
Benos et al., 2001, Genome Res. 11(5): 710--730
From First Base: the sequence of the tip of the X chromosome of Drosophila melanogaster, a comparison of two sequencing strategies. [FBrf0135823]
Spradling et al., 1999, Genetics 153(1): 135--177
The Berkeley Drosophila genome project gene disruption project. Single P-element insertions mutating 25% of vital Drosophila genes. [FBrf0111489]
Rorth, 1996, Proc. Natl. Acad. Sci. USA 93(22): 12418--12422
A modular misexpression screen in Drosophila detecting tissue-specific phenotypes. [FBrf0090768]
FlyBase analysis
FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations.
Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955]
FlyBase, 2005, Assessment of transgenic construct insertion sites.
Assessment of transgenic construct insertion sites. [FBrf0184339]
FlyBase, 1992-, FlyBase curation
FlyBase curation. [FBrf0105495]
Computer file
Gene Disruption Project members, 2001-, [title not yet available]
[title not yet available] [FBrf0132177]
BDGP Project Members, 2000-, Berkeley Drosophila Genome Project.
Berkeley Drosophila Genome Project. [FBrf0125078]
BDGP Project Members, 1994-1999, Berkeley Drosophila Genome Project.
Berkeley Drosophila Genome Project. [FBrf0067338]