A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Dmel\P{EP}fd3FEP1198 Insertion

General Information
Symbol Dmel\P{EP}fd3FEP1198 Species D. melanogaster
Name FlyBase ID FBti0007385
Feature type transposable_element_insertion_site
Description
Inserted element P{EP} Expression data
Affected gene(s) fd3F Viability / fertility
Causes allele(s) fd3FEP1198 Stock availability 1 publicly available
LINE ID EP(X)1198
Genomic Location
Chromosomal location X ( 3F2 ) Sequence location X:3,705,622..3,705,622 [+]
Map ( GBrowse ) GBrowse View Help detailed view FBti0060003 FBti0131919 FBti0071914 FBti0013883 FBti0055107 FBti0007385 FBti0070005 FBti0056643 FBti0035145 FBti0102446 FBti0021239 FBti0071927
Member of Large Scale Dataset(s)
Dataset

A set of transgenic insertion stocks derived by TE mobilization using the P-element construct P{EP}. The P{EP} construct construct carries a w[+mC] mini-white visible marker, Scer\UAS binding sites for the Scer\GAL4 transcriptional regulator, and bacterial sequences that allow plasmid rescue. The GAL4-UAS system allows regulated expression of genes proximate to the site of the insertion: genes properly oriented with respect to the Scer\UAS sequences can be conditionally expressed via transgene-derived Scer\GAL4 activity.
Insertion lines from this collection were mapped and assessed for inclusion in the Gene Disruption Project collection; flanking sequence data were submitted to GenBank.
(Rorth, 1996, Bellen et al., 2004)
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
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hide Detailed Mapping Data
Chromosome (arm)
1
(BDGP Project Members, 1994-1999)
Sequence Location
X:3,705,622..3,705,622 [+]
(BDGP Project Members, 2000-)
Orientation
Cytological location
(computed by FlyBase)
3F2 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
3F1-3F2 (in situ hybridization reported)
(BDGP Project Members, 1994-1999)
3F7-3F7 (reported as inferred from sequence location)
(BDGP Project Members, 2000-)
Comments concerning
location
hide Sequence Data
Flanking sequence
AQ025402
(FlyBase, 1992-,  
hide Inserted Element
Construct P{EP}
Location-dependent
role
mobile activating element (UASG)
(Rorth, 1996)
Size 7.987Kb
Associated alleles
Scer\UAS14x.hs
TrlBRcRa
w+mC
Molecular map
hide Affected Gene(s)
Insertion may
affect gene
fd3F
(BDGP Project Members, 2000-, Cachero et al., 2011)
hide Alleles and Phenotypes
Causes alleles
fd3FEP1198
(Cachero et al., 2011)
Lethality
References
Sterility
References
hide Phenotype Manifest In
hide Detailed Description
Statement
Reference
Flies perform normally in a climbing assay.
(Newton et al., 2012)
hide Expression Data
Reporter Expression
Additional Information
Statement
Reference
Marker for
Reflects
expression of
Reporter construct
used in assay
hide External Images
FlyView (LinkOut)
hide Data on Genetic Line
Line ID
EP(X)1198
(Gene Disruption Project members, 2001-)
Origin as a multiple insertion line
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 1 )
Bloomington
11141
w1118 P{EP}fd3FEP1198
hide Linkouts
hide Comments
Location X:3656826-3656827 confirmed by FlyBase alignment of dbGSS accession AQ025402 to D. melanogaster arm Release_4 and heterochromatin Release_3.2b. Insertion orientation confirmed.
(FlyBase, 2005)
insertion of mobile activating element
(BDGP Project Members, 1994-1999)
hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
EP1198
(Sass et al., 2003)
ep(x)1198
(FlyBase, 1992-)
EP(X)1198
(FlyBase, 1992-)
P{EP}EP1198
(FlyBase, 2005, Cachero et al., 2011, FlyBase, 1992-)
P{EP}fd3FEP1198
 
Secondary FlyBase IDs
hide References ( 11 )
Research paper
Newton et al., 2012, Dev. Cell 22(6): 1221--1233
Forkhead Transcription Factor Fd3F Cooperates with Rfx to Regulate a Gene Expression Program for Mechanosensory Cilia Specialization. [FBrf0218629]
Cachero et al., 2011, PLoS Biol. 9(1): e1000568
The gene regulatory cascade linking proneural specification with differentiation in Drosophila sensory neurons. [FBrf0212891]
Bellen et al., 2004, Genetics 167(2): 761--781
The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. [FBrf0179132]
Sass et al., 2003, Proc. Natl. Acad. Sci. U.S.A. 100(14): 8287--8291
Male-specific lethal complex of Drosophila targets activated regions of the X chromosome for chromatin remodeling. [FBrf0159712]
Rorth, 1996, Proc. Natl. Acad. Sci. U.S.A. 93(22): 12418--12422
A modular misexpression screen in Drosophila detecting tissue-specific phenotypes. [FBrf0090768]
Personal communication to FlyBase
Gene Disruption Project members, 2001-, (Computer file)
(Computer file) [FBrf0132177]
BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file)
Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
BDGP Project Members, 1994-1999, BDGP Project Members, 1994-1999, Berkeley Drosophila Genome Project. (Computer file)
BDGP Project Members, 1994-1999, Berkeley Drosophila Genome Project. (Computer file) [FBrf0067338]
FlyBase analysis
FlyBase Curators, 2013, Members of TE insertion collections.
Members of TE insertion collections. [FBrf0220668]
FlyBase, 2005, Assessment of transgenic construct insertion sites.
Assessment of transgenic construct insertion sites. [FBrf0184339]
FlyBase, 1992-, FlyBase curation.
FlyBase curation. [FBrf0105495]