A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Dmel\P{lacW}msnj1E2 Insertion

General Information
Symbol Dmel\P{lacW}msnj1E2 Species D. melanogaster
Name FlyBase ID FBti0009903
Feature type transposable_element_insertion_site
Description
Inserted element P{lacW} Expression data
Affected gene(s) Ecol\lacZ, msn Viability / fertility
Causes allele(s) Ecol\lacZmsn-j1E2, msnj1E2 Stock availability 2 publicly available
LINE ID l(3)j1E2
Genomic Location
Chromosomal location 3L ( 62E7 ) Sequence location 3L:2,586,517..2,586,517 [+]
Map ( GBrowse ) detailed view FBti0059458 FBti0049405 FBti0044403 FBti0036184 FBti0005574 FBti0103972 FBti0009539 FBti0009903 FBti0036202 FBti0033839 FBti0059010 FBti0105587 FBti0111094 FBti0039748 FBti0103728 FBti0007864 FBti0007848 FBti0106215 FBti0033583 FBti0072216 FBti0027305 FBti0104967 FBti0037476 FBti0050219 FBti0015029 FBti0112458 FBti0104410 FBti0065275 FBti0039913 FBti0125487_1 FBti0125487_2 FBti0043481
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
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This section does not currently display links that were removed or gene model changes.
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FB2012_01
FB2011_10
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hide Detailed Mapping Data
Chromosome (arm)
Sequence Location
3L:2,586,517..2,586,517 [+]
(BDGP Project Members, 1994-1999)
Orientation
Cytological location
(computed by FlyBase)
62E7 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
62E5-62E8 (in situ hybridization reported)
(BDGP Project Members, 1994-1999)
Comments concerning
location
hide Sequence Data
Flanking sequence
AQ026296
(FlyBase, 1992-,  
hide Inserted Element
Construct P{lacW}
Location-dependent
role
lacZ enhancer trap
(Bier et al., 1989)
Size 10.691Kb
Associated alleles
Ecol\lacZP\T.W
w+mC
Molecular map
hide Affected Gene(s)
Insertion may
affect gene
Ecol\lacZ
(BDGP Project Members, 1994-1999)
msn
(BDGP Project Members, 1994-1999)
hide Alleles and Phenotypes
Causes alleles
Ecol\lacZmsn-j1E2
(BDGP Project Members, 1994-1999)
msnj1E2
(BDGP Project Members, 1994-1999, Spradling et al., 1999)
Lethality
References
lethal | recessive
(Spradling et al., 1999, BDGP Project Members, 1994-1999)
Sterility
References
hide Phenotype Manifest In
hide Detailed Description
Statement
Reference
Heterozygosity for msnj1E2 can suppress the wing-vein defects, as well as wing shape and size defects seen in Scer\GAL469B, nmoc5-1.Scer\UAS adults.
(Mirkovic et al., 2002)
hide Expression Data
Reporter Expression
Additional Information
Statement
Reference
Marker for
Reflects
expression of
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FlyView (LinkOut)
hide Data on Genetic Line
Line ID
l(3)j1E2
(Gene Disruption Project members, 2001-)
Origin as a multiple insertion line
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 2 )
Bloomington
10162
y1 w1118; P{lacW}msnj1E2/TM3, Sb1
Kyoto
111007
yd2 w1118 P{ey-FLP.N}2 P{GMR-lacZ.C(38.1)}TPN1; P{lacW}msnj1E2 P{neoFRT}80B/TM6B, P{Car20y}TPN1, Tb1
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hide Comments
Location 3L:2570049-2570050 confirmed by FlyBase alignment of dbGSS accession AQ026296 to D. melanogaster arm Release_4 and heterochromatin Release_3.2b. Insertion orientation confirmed.
(FlyBase, 2005)
hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
P{lacW}l(3)j1E2j1E2
(BDGP Project Members, 1994-1999, FlyBase, 1992-)
P{lacW}msnj1E2
(FlyBase, 2005, FlyBase, 1992-)
P{lacW}Nikj1E2
(FlyBase, 1992-)
Secondary FlyBase IDs
hide References ( 8 )
Research paper
Bellen et al., 2004, Genetics 167(2): 761--781
The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. [FBrf0179132]
Mirkovic et al., 2002, Mech. Dev. 119(1): 9--20
Drosophila nemo is an essential gene involved in the regulation of programmed cell death. [FBrf0152201]
Spradling et al., 1999, Genetics 153(1): 135--177
The Berkeley Drosophila genome project gene disruption project. Single P-element insertions mutating 25% of vital Drosophila genes. [FBrf0111489]
Bier et al., 1989, Genes Dev. 3: 1273--1287
Searching for pattern and mutation in the Drosophila genome with a P-lacZ vector. [FBrf0049800]
FlyBase analysis
FlyBase, 2005, Assessment of transgenic construct insertion sites.
Assessment of transgenic construct insertion sites. [FBrf0184339]
FlyBase, 1992-, FlyBase curation
FlyBase curation. [FBrf0105495]
Computer file
Gene Disruption Project members, 2001-, [title not yet available]
[title not yet available] [FBrf0132177]
BDGP Project Members, 1994-1999, Berkeley Drosophila Genome Project.
Berkeley Drosophila Genome Project. [FBrf0067338]