A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Dmel\P{EP}dsdEP3400 Insertion

General Information
Symbol Dmel\P{EP}dsdEP3400 Species D. melanogaster
Name FlyBase ID FBti0011546
Feature type transposable_element_insertion_site
Description
Inserted element P{EP} Expression data
Affected gene(s) dsd Viability / fertility
Causes allele(s) dsdEP3400 Stock availability 1 publicly available
LINE ID EP(3)3400
Genomic Location
Chromosomal location 3R ( 98A10 ) Sequence location 3R:23,433,066..23,433,066 [-]
Map ( GBrowse ) detailed view FBti0060979 FBti0052155 FBti0143291 FBti0047331 FBti0007962 FBti0011546 FBti0105914 FBti0027371 FBti0106148 FBti0112730 FBti0104971 FBti0104566
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2012_01
FB2011_10
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Chromosome (arm)
Sequence Location
3R:23,433,066..23,433,066 [-]
(BDGP Project Members, 2000-)
Orientation
Cytological location
(computed by FlyBase)
98A10 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
98A4-98A4 (reported as inferred from sequence location)
(BDGP Project Members, 2000-)
Comments concerning
location
hide Sequence Data
Flanking sequence
AQ073979
(FlyBase, 1992-,  
hide Inserted Element
Construct P{EP}
Location-dependent
role
mobile activating element (UASG)
(Rorth, 1996)
Size 7.987Kb
Associated alleles
Scer\UAS14x.hs
TrlBRcRa
w+mC
Molecular map
hide Affected Gene(s)
Insertion may
affect gene
dsd
(BDGP Project Members, 2000-)
hide Alleles and Phenotypes
Causes alleles
dsdEP3400
(Gene Disruption Project members, 2001-)
Lethality
References
Sterility
References
hide Phenotype Manifest In
hide Detailed Description
Statement
Reference
hide Expression Data
Reporter Expression
Additional Information
Statement
Reference
Marker for
Reflects
expression of
hide External Images
FlyView (LinkOut)
hide Data on Genetic Line
Line ID
EP(3)3400
(Gene Disruption Project members, 2001-)
Origin as a multiple insertion line
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 1 )
Bloomington
17123
w1118; P{EP}dsdEP3400/TM6B, Tb+
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hide Comments
Location 3R:23433066-23433067 confirmed by FlyBase alignment of dbGSS accession AQ073979 to D. melanogaster arm Release_4 and heterochromatin Release_3.2b. Insertion orientation confirmed.
(FlyBase, 2005)
insertion of mobile activating element
(BDGP Project Members, 1994-1999)
hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
EP(3)3400
(FlyBase, 1992-)
P{EP}CG5634EP3400
(FlyBase, 1992-)
P{EP}dsdEP3400
(FlyBase, 2005, FlyBase, 1992-)
P{EP}EP3400
(FlyBase, 1992-)
Secondary FlyBase IDs
hide References ( 8 )
Research paper
Bellen et al., 2004, Genetics 167(2): 761--781
The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. [FBrf0179132]
Spradling et al., 1999, Genetics 153(1): 135--177
The Berkeley Drosophila genome project gene disruption project. Single P-element insertions mutating 25% of vital Drosophila genes. [FBrf0111489]
Rorth, 1996, Proc. Natl. Acad. Sci. USA 93(22): 12418--12422
A modular misexpression screen in Drosophila detecting tissue-specific phenotypes. [FBrf0090768]
FlyBase analysis
FlyBase, 2005, Assessment of transgenic construct insertion sites.
Assessment of transgenic construct insertion sites. [FBrf0184339]
FlyBase, 1992-, FlyBase curation
FlyBase curation. [FBrf0105495]
Computer file
Gene Disruption Project members, 2001-, [title not yet available]
[title not yet available] [FBrf0132177]
BDGP Project Members, 2000-, Berkeley Drosophila Genome Project.
Berkeley Drosophila Genome Project. [FBrf0125078]
BDGP Project Members, 1994-1999, Berkeley Drosophila Genome Project.
Berkeley Drosophila Genome Project. [FBrf0067338]