A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Dmel\P{EP}CG3939EP1535 Insertion

General Information
Symbol Dmel\P{EP}CG3939EP1535 Species D. melanogaster
Name FlyBase ID FBti0011938
Feature type transposable_element_insertion_site
Description
Inserted element P{EP} Expression data
Affected gene(s) CG3939 Viability / fertility
Causes allele(s) CG3939EP1535 Stock availability 1 publicly available
LINE ID EP(X)1535
Genomic Location
Chromosomal location X ( 3C9 ) Sequence location X:3,070,255..3,070,255 [-]
Map ( GBrowse ) detailed view FBti0019552 FBti0041798 FBti0107709 FBti0044156 FBti0049930 FBti0047680 FBti0099753 FBti0011938 FBti0037253 FBti0069024 FBti0069855 FBti0070087 FBti0070512 FBti0056644 FBti0007422
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Description
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This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
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FB2012_01
FB2011_10
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Chromosome (arm)
Sequence Location
X:3,070,255..3,070,255 [-]
(BDGP Project Members, 2000-)
Orientation
Cytological location
(computed by FlyBase)
3C9 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
3C9-3C9 (reported as inferred from sequence location)
(BDGP Project Members, 2000-)
Comments concerning
location
hide Sequence Data
Flanking sequence
AQ073247
(FlyBase, 1992-,  
hide Inserted Element
Construct P{EP}
Location-dependent
role
mobile activating element (UASG)
(Rorth, 1996)
Size 7.987Kb
Associated alleles
Scer\UAS14x.hs
TrlBRcRa
w+mC
Molecular map
hide Affected Gene(s)
Insertion may
affect gene
CG3939
(BDGP Project Members, 2000-)
hide Alleles and Phenotypes
Causes alleles
CG3939EP1535
(FlyBase, 1996-)
Lethality
References
Sterility
References
hide Phenotype Manifest In
hide Detailed Description
Statement
Reference
hide Expression Data
Reporter Expression
Additional Information
Statement
Reference
Marker for
Reflects
expression of
hide External Images
FlyView (LinkOut)
hide Data on Genetic Line
Line ID
EP(X)1535
(Gene Disruption Project members, 2001-)
Origin as a multiple insertion line
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 1 )
Bloomington
17008
w1118 P{EP}CG3939EP1535
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Location X:3032378-3032379 confirmed by FlyBase alignment of dbGSS accession AQ073247 to D. melanogaster arm Release_4 and heterochromatin Release_3.2b. Insertion orientation confirmed.
(FlyBase, 2005)
insertion of mobile activating element
(BDGP Project Members, 1994-1999)
hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
EP(X)1535
(FlyBase, 1992-)
P{EP}CG3939EP1535
(FlyBase, 2005, FlyBase, 1992-)
P{EP}EP1535
(FlyBase, 1992-)
Secondary FlyBase IDs
hide References ( 9 )
Research paper
Bellen et al., 2004, Genetics 167(2): 761--781
The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. [FBrf0179132]
Spradling et al., 1999, Genetics 153(1): 135--177
The Berkeley Drosophila genome project gene disruption project. Single P-element insertions mutating 25% of vital Drosophila genes. [FBrf0111489]
Rorth, 1996, Proc. Natl. Acad. Sci. USA 93(22): 12418--12422
A modular misexpression screen in Drosophila detecting tissue-specific phenotypes. [FBrf0090768]
FlyBase analysis
FlyBase, 2005, Assessment of transgenic construct insertion sites.
Assessment of transgenic construct insertion sites. [FBrf0184339]
FlyBase, 1996-, FlyBase inference based on genome sequence analysis.
FlyBase inference based on genome sequence analysis. [FBrf0104946]
FlyBase, 1992-, FlyBase curation
FlyBase curation. [FBrf0105495]
Computer file
Gene Disruption Project members, 2001-, [title not yet available]
[title not yet available] [FBrf0132177]
BDGP Project Members, 2000-, Berkeley Drosophila Genome Project.
Berkeley Drosophila Genome Project. [FBrf0125078]
BDGP Project Members, 1994-1999, Berkeley Drosophila Genome Project.
Berkeley Drosophila Genome Project. [FBrf0067338]