A Database of Drosophila Genes & Genomes

FB2008_07, released August 8, 2008
 

Dmel\P{GT1}cherBG02734 Insertion

General Information
Symbol Dmel\P{GT1}cherBG02734 Species D. melanogaster
Name FlyBase ID FBti0018579
Feature type transposable_element_insertion_site Created / Updated 2001-11-14/2003-10-23
Description
Inserted element P{GT1} Localized function
Affected gene(s) cher Expression data
Causes allele(s) cherBG02734 Viability / fertility viable, fertile
LINE ID BG02734 Stock availability
Genomic Location
Chromosomal location 3R ( 89E13 ) Sequence location 3R:12,944,780..12,944,780 [+]
Map ( GBrowse ) detailed view FBti0063802 FBti0065355 FBti0065894 FBti0037070 FBti0037053 FBti0018579 FBti0043644 FBti0029406 FBti0054326 FBti0099703 FBti0072682 FBti0011794 FBti0069873 FBti0051018
hide Detailed Mapping Data
Chromosome (arm)
Sequence Location
3R:12,944,780..12,944,780 [+]
(Gene Disruption Project members, 2001-)
Orientation
Cytological location
(computed by FlyBase)
89E13 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
89F1 (in situ hybridization reported)
(Zhai, 2003)
89F1 (reported as inferred from sequence location)
(Gene Disruption Project members, 2001-)
Chromosome in situ
hide Sequence Data
Flanking sequence
BH146170
(Gene Disruption Project members, 2001-, FlyBase, 1992-)
BH146171
(Gene Disruption Project members, 2001-, FlyBase, 1992-)
hide Inserted Element
Construct P{GT1}
Location-dependent
role 		 
Size 8.447, 8.447Kb
Associated alleles
Tn\neoRHsp70Bb.PS
w+mGT
Scer\GAL4GT1
Molecular map
Transposon class
Element type
hide Affected Gene(s)
Insertion within gene
Insertion may
affect gene
cher
(Gene Disruption Project members, 2001-)
Orientation
(relative to gene)
Gene
Orientation
References
 
 
 
hide Alleles and Phenotypes
Causes alleles
cherBG02734
(Gene Disruption Project members, 2001-, Levis, 2003.3)
Lethality
References
viable
(Gene Disruption Project members, 2001-)
Sterility
References
fertile
(Gene Disruption Project members, 2001-)
hide Phenotype Manifest In
hide Detailed Description
Statement
Reference
The rough eye phenotype caused by expression of Hsap\MAPTV337M.Scer\UAS under the control of Scer\GAL4GMR.PF is not modified if the flies are also carrying cherBG02734.
(Shulman and Feany, 2003)
hide Expression Data
Reporter Expression
Stage
Tissue/Position
Reference
Additional Information
Statement
Reference
Assay mode
Marker for
Reflects
expression of
hide External Images
FlyView (LinkOut)
hide Data on Genetic Line
Line ID
BG02734
(Gene Disruption Project members, 2001-)
Origin as a multiple insertion line
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 1 )
Bloomington
12868
w1118; P{GT1}cherBG02734
hide Linkouts
hide Comments
Location 3R:12944779-12944780 confirmed by FlyBase alignment of dbGSS accessions BH146171 and BH146170 to D. melanogaster arm Release_4 and heterochromatin Release_3.2b.
(FlyBase, 2005)
3\' and 5\' flanking sequence data inconsistent (same sequence, inverted); possible error in data-tracking.
(Gene Disruption Project members, 2001-)
Apparent double insertion: 5\' and 3\' flanking sequence reads map 8 nts apart on opposite strands; possible tandem double insertion.
(Gene Disruption Project members, 2001-)
hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
BG02734
(Gene Disruption Project members, 2001-, Zhai, 2003, FlyBase, 1992-)
P{GT1}cherBG02734
(FlyBase, 2005, FlyBase, 1992-)
P{GT1}cherBG02734a
(FlyBase, 1992-)
Secondary FlyBase IDs
    hide References ( 10 )
    Research paper
    Bellen et al., 2004, Genetics 167(2): 761--781
    The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. [FBrf0179132]
    Shulman and Feany, 2003, Genetics 165(3): 1233--1242
    Genetic modifiers of tauopathy in Drosophila. [FBrf0167629]
    Sokol and Cooley, 2003, Dev. Biol. 260(1): 260--272
    Drosophila filamin is required for follicle cell motility during oogenesis. [FBrf0160964]
    Sokol and Cooley, 1999, Curr. Biol. 9(21): 1221--1230
    Drosophila filamin encoded by the cheerio locus is a component of ovarian ring canals. [FBrf0112043]
    Supplementary material
    Zhai, 2003, Proc. Natl. Acad. Sci. USA 100(19):
    Table 2. P element insertions used for rough mapping. [FBrf0179100]
    Personal communication to FlyBase
    Levis, 2003.3, Alleles changes based on Levis pc.
    Alleles changes based on Levis pc. [FBrf0157307]
    Lukacsovich and Asztalos, 1999.7.15, Dual tagging gene-trap of novel genes in Drosophila melanogaster.
    Dual tagging gene-trap of novel genes in Drosophila melanogaster. [FBrf0108534]
    FlyBase analysis
    FlyBase, 2005, Assessment of transgenic construct insertion sites.
    Assessment of transgenic construct insertion sites. [FBrf0184339]
    FlyBase, 1992-, FlyBase curation
    FlyBase curation. [FBrf0105495]
    Computer file
    Gene Disruption Project members, 2001-, [title not yet available]
    [title not yet available] [FBrf0132177]