A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Dmel\S{}rdxS1357 Insertion

General Information
Symbol Dmel\S{}rdxS1357 Species D. melanogaster
Name FlyBase ID FBti0019372
Feature type transposable_element
Description
Inserted element S-element Expression data
Affected gene(s) rdx Viability / fertility
Causes allele(s) rdxS1357 Stock availability none publicly available
LINE ID
Genomic Location
Chromosomal location 3R ( 88A4 ) Sequence location 3R:9,847,424..9,849,185 [-]
Map ( GBrowse ) GBrowse View Help detailed view FBti0019372 FBti0044048 FBti0103734 FBti0037514 FBti0035498 FBti0034101 FBti0029121 FBti0102176 FBti0110377 FBti0004913 FBti0036185 FBti0056732 FBti0034615 FBti0141142 FBti0146221 FBti0054908 FBti0033351 FBti0069623 FBti0069770 FBti0069963 FBti0027119 FBti0054213 FBti0030090 FBti0017165 FBti0126078 FBti0045187 FBti0103448 FBti0037028 FBti0056811 FBti0113236 FBti0036099 FBti0100064 FBti0051932 FBti0024706 FBti0148420 FBti0037484 FBti0114295 FBti0104511 FBti0112160 FBti0036031 FBti0070896
Member of Large Scale Dataset(s)
Dataset
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
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This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
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Chromosome (arm)
Sequence Location
3R:9,847,424..9,849,185 [-]
Orientation
Cytological location
(computed by FlyBase)
88A4 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
88A4-88A4 (reported as inferred from sequence location)
(Quesneville et al., 2005.6.22)
88A4-88A4 (reported as inferred from sequence location)
(Kaminker et al., 2002)
Comments concerning
location
hide Sequence Data
Flanking sequence
hide Inserted Element
Construct S-element
Location-dependent
role
Size
Associated alleles
Molecular map
hide Affected Gene(s)
Insertion may
affect gene
rdx
(González et al., 2008)
hide Alleles and Phenotypes
Causes alleles
rdxS1357
(González et al., 2008)
Lethality
References
Sterility
References
hide Phenotype Manifest In
hide Detailed Description
Statement
Reference
hide Expression Data
Reporter Expression
Additional Information
Statement
Reference
Marker for
Reflects
expression of
Reporter construct
used in assay
hide External Images
FlyView (LinkOut)
hide Data on Genetic Line
Line ID
Origin as a multiple insertion line
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 0 )
hide Linkouts
hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
FBti0019372
(González et al., 2008)
S{}1357
(Kaminker et al., 2002, FlyBase, 1992-)
S{}rdxS1357
 
TE19372
(FlyBase, 1992-)
Secondary FlyBase IDs
hide References ( 6 )
Research paper
Fiston-Lavier et al., 2011, Nucleic Acids Res. 39(6): e36
T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data. [FBrf0213293]
González et al., 2008, PLoS Biol. 6(10): e251
High rate of recent transposable element-induced adaptation in Drosophila melanogaster. [FBrf0206197]
Quesneville et al., 2005, PLoS Comput. Biol. 1(2): e22
Combined evidence annotation of transposable elements in genome sequences. [FBrf0186342]
Kaminker et al., 2002, Genome Biol. 3(12): RESEARCH0084
The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective. [FBrf0155828]
Personal communication to FlyBase
Quesneville et al., 2005.6.22, r4 TE data.
r4 TE data. [FBrf0184336]
FlyBase analysis
FlyBase, 1992-, FlyBase curation.
FlyBase curation. [FBrf0105495]