A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Dmel\pogo{}Kmn1pogo108 Insertion

General Information
Symbol Dmel\pogo{}Kmn1pogo108 Species D. melanogaster
Name FlyBase ID FBti0019627
Feature type transposable_element
Description
Inserted element pogo Expression data
Affected gene(s) Kmn1 Viability / fertility
Causes allele(s) Kmn1pogo108 Stock availability none publicly available
LINE ID
Genomic Location
Chromosomal location X ( 10C6-10C7 ) Sequence location X:11,465,540..11,465,725 [+]
Map ( GBrowse ) GBrowse View Help detailed view FBti0019627 FBti0038342 FBti0012838 FBti0039300 FBti0103159 FBti0007482 FBti0039272 FBti0071345 FBti0046874 FBti0013166 FBti0042518 FBti0100369 FBti0013878 FBti0023345 FBti0029297 FBti0041697 FBti0049900 FBti0042304 FBti0040082 FBti0049953 FBti0048234
Member of Large Scale Dataset(s)
Dataset
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
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This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
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Chromosome (arm)
Sequence Location
X:11,465,540..11,465,725 [+]
Orientation
Cytological location
(computed by FlyBase)
10C6-10C7 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
10C7-10C7 (reported as inferred from sequence location)
(Quesneville et al., 2005.6.22)
10C7-10C7 (reported as inferred from sequence location)
(Kaminker et al., 2002)
Comments concerning
location
hide Sequence Data
Flanking sequence
hide Inserted Element
Construct pogo
Location-dependent
role
Size
Associated alleles
Molecular map
hide Affected Gene(s)
Insertion may
affect gene
Kmn1
(González et al., 2008)
hide Alleles and Phenotypes
Causes alleles
Kmn1pogo108
(González et al., 2008)
Lethality
References
Sterility
References
hide Phenotype Manifest In
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Statement
Reference
hide Expression Data
Reporter Expression
Additional Information
Statement
Reference
Marker for
Reflects
expression of
Reporter construct
used in assay
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FlyView (LinkOut)
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Line ID
Origin as a multiple insertion line
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 0 )
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hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
FBti0019627
(González et al., 2008)
pogo{}108
(Kaminker et al., 2002, FlyBase, 1992-)
pogo{}Kmn1pogo108
 
TE19627
(FlyBase, 1992-)
Secondary FlyBase IDs
hide References ( 5 )
Research paper
González et al., 2008, PLoS Biol. 6(10): e251
High rate of recent transposable element-induced adaptation in Drosophila melanogaster. [FBrf0206197]
Quesneville et al., 2005, PLoS Comput. Biol. 1(2): e22
Combined evidence annotation of transposable elements in genome sequences. [FBrf0186342]
Kaminker et al., 2002, Genome Biol. 3(12): RESEARCH0084
The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective. [FBrf0155828]
Personal communication to FlyBase
Quesneville et al., 2005.6.22, r4 TE data.
r4 TE data. [FBrf0184336]
FlyBase analysis
FlyBase, 1992-, FlyBase curation.
FlyBase curation. [FBrf0105495]