A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Dmel\P{GT1}vsgBG00708 Insertion

General Information
Symbol Dmel\P{GT1}vsgBG00708 Species D. melanogaster
Name FlyBase ID FBti0024422
Feature type transposable_element_insertion_site
Description
Inserted element P{GT1} Expression data
Affected gene(s) vsg Viability / fertility viable, fertile
Causes allele(s) vsgBG00708 Stock availability 1 publicly available
LINE ID BG00708
Genomic Location
Chromosomal location 3L ( 67C5 ) Sequence location 3L:9,707,566..9,707,566 [+]
Map ( GBrowse ) detailed view FBti0103255 FBti0038794 FBti0112456 FBti0033240 FBti0028409 FBti0102376 FBti0113129 FBti0039769 FBti0029146 FBti0024422 FBti0106955 FBti0111139 FBti0099949 FBti0055228 FBti0027440 FBti0105249 FBti0074749 FBti0143883 FBti0041229 FBti0046991 FBti0046953 FBti0125606 FBti0070826 FBti0109756 FBti0041269
hide Recent Updates
Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
Update Feed
Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
atom feed
FB2012_01
FB2011_10
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
Chromosome (arm)
Sequence Location
3L:9,707,566..9,707,566 [+]
(FlyBase, 2005)
Orientation
Cytological location
(computed by FlyBase)
67C5 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
67B13 (reported as inferred from sequence location)
(Gene Disruption Project members, 2001-)
Comments concerning
location
hide Sequence Data
Flanking sequence
BH901109
(Gene Disruption Project members, 2001-, FlyBase, 1992-)
hide Inserted Element
Construct P{GT1}
Location-dependent
role
GAL4 gene trap
(Lukacsovich and Asztalos, 1999.7.15)
Size 8.447, 8.447Kb
Associated alleles
Scer\GAL4GT1
Tn\neoRHsp70Bb.PS
w+mGT
Molecular map
hide Affected Gene(s)
Insertion may
affect gene
vsg
(Gene Disruption Project members, 2001-, Zhou et al., 2006)
hide Alleles and Phenotypes
Causes alleles
vsgBG00708
(FlyBase Genome Annotators, 2002-2003, Zhou et al., 2006)
Lethality
References
viable
(Gene Disruption Project members, 2001-)
Sterility
References
fertile
(Gene Disruption Project members, 2001-)
hide Phenotype Manifest In
melanotic mass
(Zhou et al., 2006)
hide Detailed Description
Statement
Reference
Less than 50% of vsgBG00708 embryos are able to develop into adults. Only about 50% of first instar larvae are able to develop into the adult stage. Approximately 20-30% of third instar larvae and adult vsgBG00708 animals have melanotic capsules embedded in the fat body.
(Zhou et al., 2006)
hide Expression Data
Reporter Expression
Additional Information
Statement
Reference
Marker for
Reflects
expression of
hide External Images
FlyView (LinkOut)
hide Data on Genetic Line
Line ID
BG00708
(Gene Disruption Project members, 2001-)
Origin as a multiple insertion line
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 1 )
Bloomington
14574
w1118; P{GT1}vsgBG00708
hide Linkouts
hide Comments
Location 3L:9688412-9688413 determined by FlyBase alignment of dbGSS accession BH901109 to D. melanogaster arm Release_4 and heterochromatin Release_3.2b. Insertion orientation revised.
(FlyBase, 2005)
hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
BG00708
(Gene Disruption Project members, 2001-)
P{GT1}BG00708
(FlyBase, 1992-)
P{GT1}vsgBG00708
(FlyBase, 2005, FlyBase, 1992-, Zhou et al., 2006)
Secondary FlyBase IDs
hide References ( 7 )
Research paper
Zhou et al., 2006, J. Cell. Biochem. 99(5): 1380--1396
The Drosophila ortholog of the endolysosomal membrane protein, endolyn, regulates cell proliferation. [FBrf0191883]
Bellen et al., 2004, Genetics 167(2): 761--781
The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. [FBrf0179132]
Personal communication to FlyBase
Lukacsovich and Asztalos, 1999.7.15, Dual tagging gene-trap of novel genes in Drosophila melanogaster.
Dual tagging gene-trap of novel genes in Drosophila melanogaster. [FBrf0108534]
FlyBase analysis
FlyBase, 2005, Assessment of transgenic construct insertion sites.
Assessment of transgenic construct insertion sites. [FBrf0184339]
FlyBase Genome Annotators, 2002-2003, Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome.
Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. [FBrf0148886]
FlyBase, 1992-, FlyBase curation
FlyBase curation. [FBrf0105495]
Computer file
Gene Disruption Project members, 2001-, [title not yet available]
[title not yet available] [FBrf0132177]