A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Dmel\P{EPgy2}scramb2EY01180 Insertion

General Information
Symbol Dmel\P{EPgy2}scramb2EY01180 Species D. melanogaster
Name FlyBase ID FBti0027064
Feature type transposable_element_insertion_site
Description
Inserted element P{EPgy2} Expression data
Affected gene(s) scramb2 Viability / fertility viable, fertile
Causes allele(s) scramb2EY01180 Stock availability 1 publicly available
LINE ID EY01180
Genomic Location
Chromosomal location 3L ( 63A3 ) Sequence location 3L:3,046,809..3,046,809 [+]
Map ( GBrowse ) detailed view FBti0020026 FBti0020027 FBti0125492_2 FBti0125492_1 FBti0053937 FBti0074714 FBti0039346 FBti0105958 FBti0035338 FBti0027221 FBti0035127 FBti0125493 FBti0042057 FBti0107620 FBti0027064 FBti0112138 FBti0106792 FBti0023507 FBti0102565 FBti0055842 FBti0124413 FBti0124997_2 FBti0124997_1 FBti0038730 FBti0037610
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Description
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FB2012_01
FB2011_10
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Chromosome (arm)
Sequence Location
3L:3,046,809..3,046,809 [+]
(Gene Disruption Project members, 2001-)
Orientation
Cytological location
(computed by FlyBase)
63A3 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
63B5 (reported as inferred from sequence location)
(Gene Disruption Project members, 2001-)
Comments concerning
location
hide Sequence Data
Flanking sequence
CC060068
(Gene Disruption Project members, 2001-, FlyBase, 1992-)
hide Inserted Element
Construct P{EPgy2}
Location-dependent
role
mobile activating element (UASG)
(Bellen et al., 2004)
Size 10.908Kb
Associated alleles
Scer\UAS14x.P\T
TrlBRcRa
w+mC
y+mDint2
Molecular map
hide Affected Gene(s)
Insertion may
affect gene
scramb2
(Gene Disruption Project members, 2001-, FlyBase Curators, 2008, Shen et al., 2009)
hide Alleles and Phenotypes
Causes alleles
scramb2EY01180
(FlyBase Curators, 2008, Shen et al., 2009)
Lethality
References
viable
(Gene Disruption Project members, 2001-)
Sterility
References
fertile
(Gene Disruption Project members, 2001-)
hide Phenotype Manifest In
hide Detailed Description
Statement
Reference
hide Expression Data
Reporter Expression
Additional Information
Statement
Reference
Marker for
Reflects
expression of
hide External Images
FlyView (LinkOut)
hide Data on Genetic Line
Line ID
EY01180
(Gene Disruption Project members, 2001-)
Origin as a multiple insertion line
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 1 )
Bloomington
15499
y1 w67c23; P{EPgy2}scramb2EY01180
hide Linkouts
hide Comments
Location 3L:3030340-3030342 confirmed by FlyBase alignment of dbGSS accession CC060068 to D. melanogaster arm Release_4 and heterochromatin Release_3.2b. Insertion orientation confirmed.
(FlyBase, 2005)
hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
EP-Sk2
(Shen et al., 2009)
EY01180
(Gene Disruption Project members, 2001-)
P{EPgy2}EY01180
(FlyBase, 2005, FlyBase, 1992-)
P{EPgy2}scramb2EY01180
(FlyBase, 1992-)
P{EPgy2}scramb2EY01180
(Shen et al., 2009)
Secondary FlyBase IDs
hide References ( 6 )
Research paper
Shen et al., 2009, Aging 1(2): 191--211
A screen of apoptosis and senescence regulatory genes for life span effects when over-expressed in Drosophila. [FBrf0209964]
Bellen et al., 2004, Genetics 167(2): 761--781
The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. [FBrf0179132]
FlyBase analysis
FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations.
Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955]
FlyBase, 2005, Assessment of transgenic construct insertion sites.
Assessment of transgenic construct insertion sites. [FBrf0184339]
FlyBase, 1992-, FlyBase curation
FlyBase curation. [FBrf0105495]
Computer file
Gene Disruption Project members, 2001-, [title not yet available]
[title not yet available] [FBrf0132177]