A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Dmel\P{?EPgy2}pch2EY01788a Insertion

General Information
Symbol Dmel\P{?EPgy2}pch2EY01788a Species D. melanogaster
Name FlyBase ID FBti0027102
Feature type transposable_element_insertion_site
Description
Inserted element P{?EPgy2} Expression data
Affected gene(s) pch2 Viability / fertility viable, fertile
Causes allele(s) pch2EY01788a Stock availability 1 publicly available
LINE ID EY01788
Genomic Location
Chromosomal location 3R ( 85A3 ) Sequence location 3R:4,387,342..4,387,342 [+]
Map ( GBrowse ) detailed view FBti0019338 FBti0075522 FBti0143039 FBti0042487 FBti0145470 FBti0027102 FBti0108664 FBti0037814_2 FBti0109866 FBti0125970 FBti0041792 FBti0037814_1 FBti0067326 FBti0111463 FBti0025579 FBti0050835
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
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This section does not currently display links that were removed or gene model changes.
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FB2012_01
FB2011_10
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hide Detailed Mapping Data
Chromosome (arm)
Sequence Location
3R:4,387,342..4,387,342 [+]
(FlyBase, 2005)
Orientation
Cytological location
(computed by FlyBase)
85A3 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
85A3 (reported as inferred from sequence location)
(Gene Disruption Project members, 2001-)
Comments concerning
location
hide Sequence Data
Flanking sequence
CC060110
(Gene Disruption Project members, 2001-)
hide Inserted Element
Construct P{?EPgy2}
Location-dependent
role
Size
Associated alleles
Molecular map
hide Affected Gene(s)
Insertion may
affect gene
pch2
(Gene Disruption Project members, 2001-, Joyce and McKim, 2009)
hide Alleles and Phenotypes
Causes alleles
pch2EY01788a
(Gene Disruption Project members, 2001-, Joyce and McKim, 2009)
Lethality
References
viable
(Gene Disruption Project members, 2001-, Joyce and McKim, 2009)
Sterility
References
female fertile
(Joyce and McKim, 2009)
fertile
(Gene Disruption Project members, 2001-)
hide Phenotype Manifest In
hide Detailed Description
Statement
Reference
pch2[EY01788a]/Df(3R)p-XT103 females show a normal distribution and frequency of X-chromosome crossing over. The frequency of region 3 cysts with two pro-oocytes (as assayed by c(3)G staining) in pch2[EY01788a] females is not significantly different from that seen in wild-type females.
(Joyce and McKim, 2009)
The high frequency of region 3 cysts containing two pro-oocytes that is seen in hdm[g7], mei-9[A2] or okr[WS] homozygous females is suppressed by pch2[EY01788a]. pch2[EY01788a] enhances the increased X chromosome non-disjunction phenotype seen in hdm[g7] females.
(Joyce and McKim, 2009)
hide Expression Data
Reporter Expression
Additional Information
Statement
Reference
Marker for
Reflects
expression of
hide External Images
FlyView (LinkOut)
hide Data on Genetic Line
Line ID
EY01788
(Gene Disruption Project members, 2001-)
Origin as a multiple insertion line
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 1 )
Bloomington
15536
y1 w67c23; P{?EPgy2}pch2EY01788a P{EPgy2}EY01788b
hide Linkouts
hide Comments
Location 3R:4387341-4387342 determined by FlyBase alignment of dbGSS accession CC060110 to D. melanogaster arm Release_4 and heterochromatin Release_3.2b. Insertion orientation revised.
(FlyBase, 2005)
hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
EY01788
(Gene Disruption Project members, 2001-)
P{?EPgy2}pch2EY01788a
(FlyBase, 1992-, )
P{EPgy2}CG31453EY01788a
(FlyBase, 2005, Joyce and McKim, 2009, FlyBase, 1992-)
P{EPgy2}EY01788
(FlyBase, 1992-)
Secondary FlyBase IDs
hide References ( 5 )
Research paper
Joyce and McKim, 2009, Genetics 181(1): 39--51
Drosophila PCH2 is required for a pachytene checkpoint that monitors double-strand-break-independent events leading to meiotic crossover formation. [FBrf0207080]
Bellen et al., 2004, Genetics 167(2): 761--781
The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. [FBrf0179132]
FlyBase analysis
FlyBase, 2005, Assessment of transgenic construct insertion sites.
Assessment of transgenic construct insertion sites. [FBrf0184339]
FlyBase, 1992-, FlyBase curation
FlyBase curation. [FBrf0105495]
Computer file
Gene Disruption Project members, 2001-, [title not yet available]
[title not yet available] [FBrf0132177]