A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Dmel\PBac{5HPw+}coilB220 Insertion

General Information
Symbol Dmel\PBac{5HPw+}coilB220 Species D. melanogaster
Name FlyBase ID FBti0037747
Feature type transposable_element_insertion_site
Description
Inserted element PBac{5HPw+} Expression data
Affected gene(s) coil Viability / fertility
Causes allele(s) coilB220 Stock availability 1 publicly available
LINE ID PA08624
Genomic Location
Chromosomal location 2R ( 44B3 ) Sequence location 2R:4,014,727..4,014,727 [+]
Map ( GBrowse ) detailed view FBti0105352 FBti0108374 FBti0021395 FBti0026422 FBti0025038 FBti0047524 FBti0125029_2 FBti0125029_1 FBti0037747 FBti0042620 FBti0021269 FBti0047721 FBti0103694 FBti0025687 FBti0113322 FBti0010986 FBti0056878 FBti0071136 FBti0111650 FBti0100891 FBti0021188 FBti0102310 FBti0070554 FBti0099832 FBti0109183 FBti0036693 FBti0103536 FBti0105534 FBti0042151 FBti0078341
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
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This section does not currently display links that were removed or gene model changes.
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FB2012_01
FB2011_10
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Chromosome (arm)
Sequence Location
2R:4,014,727..4,014,727 [+]
(Berkeley Drosophila Genome Project, 2006.4.26)
Orientation
Cytological location
(computed by FlyBase)
44B3 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
44B4 (reported as inferred from sequence location)
(Berkeley Drosophila Genome Project, 2006.4.26)
Comments concerning
location
hide Sequence Data
Flanking sequence
DX575390
(Berkeley Drosophila Genome Project, 2006.4.26)
DX575391
(Berkeley Drosophila Genome Project, 2006.4.26)
DX575798
(Berkeley Drosophila Genome Project, 2006.4.26)
hide Inserted Element
Construct PBac{5HPw+}
Location-dependent
role
Size 6.938Kb
Associated alleles
w+mC
Molecular map
hide Affected Gene(s)
Insertion may
affect gene
coil
(Berkeley Drosophila Genome Project, 2006.4.26, Liu et al., 2009, FlyBase Curators, 2008)
hide Alleles and Phenotypes
Causes alleles
coilB220
(Liu et al., 2009, FlyBase Curators, 2008)
Lethality
References
viable
(Liu et al., 2009)
Sterility
References
fertile
(Liu et al., 2009)
hide Phenotype Manifest In
hide Detailed Description
Statement
Reference
hide Expression Data
Reporter Expression
Additional Information
Statement
Reference
Marker for
Reflects
expression of
hide External Images
FlyView (LinkOut)
hide Data on Genetic Line
Line ID
PA08624
(Berkeley Drosophila Genome Project, 2006.4.26)
Origin as a multiple insertion line
N
(Berkeley Drosophila Genome Project, 2006.4.26)
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 1 )
Bloomington
16172
y1 w1118; PBac{5HPw+}coilB220/CyO
hide Linkouts
hide Comments
Resequencing confirmed original insertion site.
(Ring and Garza, 2003.6.10)
hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
P{5HPw+}coilinB220
(Liu et al., 2009)
PBac{5HPw+}B220
(FlyBase, 1992-)
PBac{5HPw+}coilB220
 
PBac{5HPw+}coilinB220
(FlyBase, 1992-)
Secondary FlyBase IDs
hide References ( 7 )
Research paper
Liu et al., 2009, Mol. Biol. Cell 20(6): 1661--1670
Coilin is essential for Cajal body organization in Drosophila melanogaster. [FBrf0207514]
Bellen et al., 2004, Genetics 167(2): 761--781
The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. [FBrf0179132]
Personal communication to FlyBase
Berkeley Drosophila Genome Project, 2006.4.26, BDGP TI submission.
BDGP TI submission. [FBrf0188739]
Ring and Garza, 2003.6.10, PBac Constructs from the Project 'Genome Wide Dispersal of Half-P Elements in Drosophila Using PiggyBac.
PBac Constructs from the Project 'Genome Wide Dispersal of Half-P Elements in Drosophila Using PiggyBac. [FBrf0159884]
FlyBase analysis
FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations.
Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955]
FlyBase, 1992-, FlyBase curation
FlyBase curation. [FBrf0105495]
Thesis
Ring, 2001, Ph.D. Thesis, Florida State University, FL: xii + 219pp
Functional analysis of the Drosophila genome using transposable elements. [FBrf0152434]