A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Dmel\PBac{5HPw+}B472 Insertion

General Information
Symbol Dmel\PBac{5HPw+}B472 Species D. melanogaster
Name FlyBase ID FBti0037800
Feature type transposable_element_insertion_site
Description
Inserted element PBac{5HPw+} Expression data
Affected gene(s) Viability / fertility fertile, viable
Causes allele(s) Stock availability 1 publicly available
LINE ID PA08528
Genomic Location
Chromosomal location 3R ( 94A13 ) Sequence location 3R:18,250,695..18,250,695 [-]
Map ( GBrowse ) GBrowse View Help detailed view FBti0126211_1 FBti0126211_2 FBti0126212 FBti0128353 FBti0146322 FBti0041669 FBti0066885 FBti0011462 FBti0039843 FBti0037800 FBti0065574 FBti0048422
Member of Large Scale Dataset(s)
Dataset

PBac{5HPw[+]} is a 5' half P-element construct marked with the w[+mC] mini-white marker nested within a Tni\piggyBac-based construct; mobilization requires a source of Tni\piggyBac transposase.
A set of transgenic insertion stocks derived by TE mobilization using the Tni\piggyBac-based construct PBac{5HPw[+]}.
(Ring and Garza, 2003.6.10, Bellen et al., 2004)
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
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Chromosome (arm)
Sequence Location
3R:18,250,695..18,250,695 [-]
(Berkeley Drosophila Genome Project, 2006.4.26)
Orientation
Cytological location
(computed by FlyBase)
94A13 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
94A13 (reported as inferred from sequence location)
(Berkeley Drosophila Genome Project, 2006.4.26)
Comments concerning
location
hide Sequence Data
Flanking sequence
DX575346
(Berkeley Drosophila Genome Project, 2006.4.26)
DX575347
(Berkeley Drosophila Genome Project, 2006.4.26)
DX575776
(Berkeley Drosophila Genome Project, 2006.4.26)
hide Inserted Element
Construct PBac{5HPw+}
Location-dependent
role
Size 6.938Kb
Associated alleles
w+mC
Molecular map
hide Affected Gene(s)
Insertion may
affect gene
hide Alleles and Phenotypes
Causes alleles
Lethality
References
viable
(Ring and Garza, 2003.6.10)
Sterility
References
fertile
(Ring and Garza, 2003.6.10)
hide Phenotype Manifest In
hide Detailed Description
Statement
Reference
hide Expression Data
Reporter Expression
Additional Information
Statement
Reference
Marker for
Reflects
expression of
Reporter construct
used in assay
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FlyView (LinkOut)
hide Data on Genetic Line
Line ID
PA08528
(Berkeley Drosophila Genome Project, 2006.4.26)
Origin as a multiple insertion line
N
(Berkeley Drosophila Genome Project, 2006.4.26)
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 1 )
Bloomington
16226
y1 w1118; PBac{5HPw+}B472
hide Linkouts
hide Comments
Resequencing results not yet available.
(Ring and Garza, 2003.6.10)
hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
PBac{5HPw+}B472
(FlyBase, 1992-, )
Secondary FlyBase IDs
hide References ( 6 )
Research paper
Bellen et al., 2004, Genetics 167(2): 761--781
The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. [FBrf0179132]
Personal communication to FlyBase
Berkeley Drosophila Genome Project, 2006.4.26, BDGP TI submission.
BDGP TI submission. [FBrf0188739]
Ring and Garza, 2003.6.10, PBac Constructs from the Project 'Genome Wide Dispersal of Half-P Elements in Drosophila Using PiggyBac.
PBac Constructs from the Project 'Genome Wide Dispersal of Half-P Elements in Drosophila Using PiggyBac. [FBrf0159884]
FlyBase analysis
FlyBase Curators, 2013, Members of TE insertion collections.
Members of TE insertion collections. [FBrf0220668]
FlyBase, 1992-, FlyBase curation.
FlyBase curation. [FBrf0105495]
Thesis
Ring, 2001, Ph.D. Thesis, Florida State University, FL: xii + 219pp
Functional analysis of the Drosophila genome using transposable elements. [FBrf0152434]