A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Dmel\PBac{5HPw+}Cyp313b1B505 Insertion

General Information
Symbol Dmel\PBac{5HPw+}Cyp313b1B505 Species D. melanogaster
Name FlyBase ID FBti0037808
Feature type transposable_element_insertion_site
Description
Inserted element PBac{5HPw+} Expression data
Affected gene(s) Cyp313b1 Viability / fertility fertile, viable
Causes allele(s) Cyp313b1B505 Stock availability 1 publicly available
LINE ID PA08560
Genomic Location
Chromosomal location 3R ( 85A5 ) Sequence location 3R:4,468,804..4,468,812 [+]
Map ( GBrowse ) GBrowse View Help detailed view FBti0048644 FBti0037808 FBti0041504 FBti0126472 FBti0102682 FBti0014109 FBti0009967 FBti0068015 FBti0068017 FBti0125971_2 FBti0125971_1 FBti0106136 FBti0025189 FBti0103797 FBti0013445
Member of Large Scale Dataset(s)
Dataset

PBac{5HPw[+]} is a 5' half P-element construct marked with the w[+mC] mini-white marker nested within a Tni\piggyBac-based construct; mobilization requires a source of Tni\piggyBac transposase.
A set of transgenic insertion stocks derived by TE mobilization using the Tni\piggyBac-based construct PBac{5HPw[+]}.
(Ring and Garza, 2003.6.10, Bellen et al., 2004)
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Description
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This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
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hide Detailed Mapping Data
Chromosome (arm)
Sequence Location
3R:4,468,804..4,468,812 [+]
(Berkeley Drosophila Genome Project, 2006.4.26)
Orientation
Cytological location
(computed by FlyBase)
85A5 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
85A5 (reported as inferred from sequence location)
(Berkeley Drosophila Genome Project, 2006.4.26)
Comments concerning
location
hide Sequence Data
Flanking sequence
DX575360
(Berkeley Drosophila Genome Project, 2006.4.26)
DX575361
(Berkeley Drosophila Genome Project, 2006.4.26)
DX575784
(Berkeley Drosophila Genome Project, 2006.4.26)
hide Inserted Element
Construct PBac{5HPw+}
Location-dependent
role
Size 6.938Kb
Associated alleles
w+mC
Molecular map
hide Affected Gene(s)
Insertion may
affect gene
Cyp313b1
(Berkeley Drosophila Genome Project, 2006.4.26, FlyBase Curators, 2008)
hide Alleles and Phenotypes
Causes alleles
Cyp313b1B505
(FlyBase Curators, 2008)
Lethality
References
viable
(Ring and Garza, 2003.6.10)
Sterility
References
fertile
(Ring and Garza, 2003.6.10)
hide Phenotype Manifest In
hide Detailed Description
Statement
Reference
hide Expression Data
Reporter Expression
Additional Information
Statement
Reference
Marker for
Reflects
expression of
Reporter construct
used in assay
hide External Images
FlyView (LinkOut)
hide Data on Genetic Line
Line ID
PA08560
(Berkeley Drosophila Genome Project, 2006.4.26)
Origin as a multiple insertion line
N
(Berkeley Drosophila Genome Project, 2006.4.26)
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 1 )
Bloomington
16234
y1 w1118; PBac{5HPw+}Cyp313b1B505
hide Linkouts
hide Comments
Resequencing confirmed original insertion site.
(Ring and Garza, 2003.6.10)
hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
PBac{5HPw+}B505
(FlyBase, 1992-)
PBac{5HPw+}Cyp313b1B505
(FlyBase, 1992-, )
Secondary FlyBase IDs
hide References ( 7 )
Research paper
Bellen et al., 2004, Genetics 167(2): 761--781
The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. [FBrf0179132]
Personal communication to FlyBase
Berkeley Drosophila Genome Project, 2006.4.26, BDGP TI submission.
BDGP TI submission. [FBrf0188739]
Ring and Garza, 2003.6.10, PBac Constructs from the Project 'Genome Wide Dispersal of Half-P Elements in Drosophila Using PiggyBac.
PBac Constructs from the Project 'Genome Wide Dispersal of Half-P Elements in Drosophila Using PiggyBac. [FBrf0159884]
FlyBase analysis
FlyBase Curators, 2013, Members of TE insertion collections.
Members of TE insertion collections. [FBrf0220668]
FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations.
Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955]
FlyBase, 1992-, FlyBase curation.
FlyBase curation. [FBrf0105495]
Thesis
Ring, 2001, Ph.D. Thesis, Florida State University, FL: xii + 219pp
Functional analysis of the Drosophila genome using transposable elements. [FBrf0152434]