A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Dmel\P{EPgy2}trsnEY06981 Insertion

General Information
Symbol Dmel\P{EPgy2}trsnEY06981 Species D. melanogaster
Name FlyBase ID FBti0039390
Feature type transposable_element_insertion_site
Description
Inserted element P{EPgy2} Expression data
Affected gene(s) trsn Viability / fertility fertile, viable
Causes allele(s) trsnEY06981 Stock availability 1 publicly available
LINE ID EY06981
Genomic Location
Chromosomal location 2R ( 47A11 ) Sequence location 2R:6,366,896..6,366,896 [+]
Map ( GBrowse ) detailed view FBti0075910 FBti0048742 FBti0037421 FBti0028144 FBti0036483 FBti0037438 FBti0034948 FBti0059320 FBti0069634 FBti0035495 FBti0056431 FBti0070401 FBti0029501 FBti0033379 FBti0113335 FBti0055251 FBti0107615 FBti0107488 FBti0021697 FBti0059261 FBti0033380 FBti0028738 FBti0109264 FBti0109265 FBti0069515 FBti0028561 FBti0070206 FBti0065337 FBti0047437 FBti0044319 FBti0039390 FBti0125086_2 FBti0049990 FBti0125086_1 FBti0037904 FBti0046665 FBti0065907 FBti0105508 FBti0075390
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Description
What does this section display?
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This section does not currently display links that were removed or gene model changes.
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FB2012_01
FB2011_10
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hide Detailed Mapping Data
Chromosome (arm)
Sequence Location
2R:6,366,896..6,366,896 [+]
(Gene Disruption Project members, 2001-)
Orientation
Cytological location
(computed by FlyBase)
47A11 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
47A11 (reported as inferred from sequence location)
(Gene Disruption Project members, 2001-)
Comments concerning
location
hide Sequence Data
Flanking sequence
CL527962
(Gene Disruption Project members, 2001-)
hide Inserted Element
Construct P{EPgy2}
Location-dependent
role
mobile activating element (UASG)
(Bellen et al., 2004)
Size 10.908Kb
Associated alleles
Scer\UAS14x.P\T
TrlBRcRa
w+mC
y+mDint2
Molecular map
hide Affected Gene(s)
Insertion may
affect gene
trsn
(Gene Disruption Project members, 2001-, Liu et al., 2009, Suseendranathan et al., 2007)
hide Alleles and Phenotypes
Causes alleles
trsnEY06981
(Gene Disruption Project members, 2001-, Claussen et al., 2006, Liu et al., 2009, Suseendranathan et al., 2007)
Lethality
References
viable
(Gene Disruption Project members, 2001-, Claussen et al., 2006, Suseendranathan et al., 2007)
Sterility
References
fertile
(Gene Disruption Project members, 2001-, Claussen et al., 2006, Suseendranathan et al., 2007)
hide Phenotype Manifest In
hide Detailed Description
Statement
Reference
Homozygotes are viable and show no obvious morphological defects. Homozygotes show normal geotatic, phototactic and olfactory response behaviours. However, homozygotes do show a significantly reduced benzaldehyde-induced jump response, demonstrating reduced motor activity. Male and female fertility is normal in trsn[EY06981] homozygotes.
(Suseendranathan et al., 2007)
hide Expression Data
Reporter Expression
Additional Information
Statement
Reference
Marker for
Reflects
expression of
hide External Images
FlyView (LinkOut)
hide Data on Genetic Line
Line ID
EY06981
(Gene Disruption Project members, 2001-)
Origin as a multiple insertion line
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 1 )
Bloomington
16774
y1 w67c23; P{EPgy2}trsnEY06981
hide Linkouts
hide Comments
Location 2R:5991204-5991205 confirmed by FlyBase alignment of dbGSS accession CL527962 to D. melanogaster arm Release_4 and heterochromatin Release_3.2b. Insertion orientation confirmed.
(FlyBase, 2005)
hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
P{EPgy2}EY06981
(FlyBase, 1992-)
P{EPgy2}translinEY06981
(FlyBase, 2005, FlyBase, 1992-, Suseendranathan et al., 2007)
P{EPgy2}trsnEY06981
(FlyBase, 1992-)
pEY06981
(Suseendranathan et al., 2007)
pEY06981
(Claussen et al., 2006, Suseendranathan et al., 2007)
unnamed
(Liu et al., 2009)
Secondary FlyBase IDs
hide References ( 7 )
Research paper
Liu et al., 2009, Science 325(5941): 750--753
C3PO, an endoribonuclease that promotes RNAi by facilitating RISC activation. [FBrf0208622]
Suseendranathan et al., 2007, Europ. J. Cell Biol. 86(3): 173--186
Expression pattern of Drosophila translin and behavioral analyses of the mutant. [FBrf0192754]
Claussen et al., 2006, Genetics 174(3): 1337--1347
Functional characterization of Drosophila Translin and Trax. [FBrf0192583]
Bellen et al., 2004, Genetics 167(2): 761--781
The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. [FBrf0179132]
FlyBase analysis
FlyBase, 2005, Assessment of transgenic construct insertion sites.
Assessment of transgenic construct insertion sites. [FBrf0184339]
FlyBase, 1992-, FlyBase curation
FlyBase curation. [FBrf0105495]
Computer file
Gene Disruption Project members, 2001-, [title not yet available]
[title not yet available] [FBrf0132177]