A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Dmel\PBac{PB}Caf1-105c01369 Insertion

General Information
Symbol Dmel\PBac{PB}Caf1-105c01369 Species D. melanogaster
Name FlyBase ID FBti0040940
Feature type transposable_element_insertion_site
Description
Inserted element PBac{PB} Expression data
Affected gene(s) Caf1-105 Viability / fertility
Causes allele(s) Caf1-105c01369 Stock availability 2 publicly available
LINE ID c01369
Genomic Location
Chromosomal location 2R ( 47A9 ) Sequence location 2R:6,356,092..6,356,092 [-]
Map ( GBrowse ) detailed view FBti0111054 FBti0076370 FBti0048013 FBti0102558 FBti0124343 FBti0040940 FBti0075910 FBti0048742 FBti0037421 FBti0028144 FBti0036483 FBti0037438 FBti0034948 FBti0059320 FBti0069634 FBti0035495 FBti0056431 FBti0070401 FBti0029501 FBti0033379 FBti0113335 FBti0055251 FBti0107615 FBti0107488 FBti0021697 FBti0059261
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Description
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FB2012_01
FB2011_10
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Chromosome (arm)
Sequence Location
Orientation
Cytological location
(computed by FlyBase)
47A9 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
47A9 (reported as inferred from sequence location)
Comments concerning
location
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Flanking sequence
hide Inserted Element
Construct PBac{PB}
Location-dependent
role
deletion generation component
carries FRT site(s)
Size 7.257Kb
Associated alleles
Molecular map
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Insertion may
affect gene
hide Alleles and Phenotypes
Causes alleles
Lethality
References
Sterility
References
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Statement
Reference
hide Expression Data
Reporter Expression
Additional Information
Statement
Reference
Marker for
Reflects
expression of
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FlyView (LinkOut)
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Line ID
Origin as a multiple insertion line
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 2 )
Bloomington
Harvard
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hide Comments
Location 2R:5980400-5980401 confirmed by FlyBase alignment of dbGSS accession CZ467107 to D. melanogaster arm Release_4 and heterochromatin Release_3.2b. Insertion orientation confirmed.
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Reported As
Symbol Synonym
PBac{PB}Caf1-105c01369
Secondary FlyBase IDs
hide References ( 9 )
Research paper
Bellen et al., 2004, Genetics 167(2): 761--781
The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. [FBrf0179132]
Thibault et al., 2004, Nature Genetics 36(3): 283--287
A complementary transposon tool kit for Drosophila melanogaster using P and piggyBac. [FBrf0175002]
Supplementary material
Thibault, 2004, Nature Genetics 36(3):
Supplementary Table 2. [FBrf0174227]
Thibault, 2004, Nature Genetics 36(3):
Supplementary Table 3. [FBrf0174228]
Personal communication to FlyBase
Bloomington Drosophila Stock Center, 2004.11.6, Exelixis insertion alleles that are not in FlyBase.
Exelixis insertion alleles that are not in FlyBase. [FBrf0179797]
FlyBase analysis
FlyBase, 2005, Assessment of transgenic construct insertion sites.
Assessment of transgenic construct insertion sites. [FBrf0184339]
FlyBase, 1992-, FlyBase curation
FlyBase curation. [FBrf0105495]
Computer file
Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection.
Genomic mapping of Exelixis insertion collection. [FBrf0184340]
Gene Disruption Project members, 2001-, [title not yet available]
[title not yet available] [FBrf0132177]