A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Dmel\PBac{PB}GRHRc03956 Insertion

General Information
Symbol Dmel\PBac{PB}GRHRc03956 Species D. melanogaster
Name FlyBase ID FBti0041118
Feature type transposable_element_insertion_site
Description
Inserted element PBac{PB} Expression data
Affected gene(s) GRHR Viability / fertility
Causes allele(s) GRHRc03956 Stock availability 2 publicly available
LINE ID c03956
Genomic Location
Chromosomal location 2L ( 27A1 ) Sequence location 2L:6,714,248..6,714,248 [+]
Map ( GBrowse ) detailed view FBti0034936 FBti0030024 FBti0034747 FBti0058975 FBti0054097 FBti0070447 FBti0107181 FBti0056595 FBti0024979 FBti0041118 FBti0124613_2 FBti0124613_1 FBti0044090 FBti0126877 FBti0040234 FBti0025960 FBti0057825 FBti0106743 FBti0113208 FBti0126876 FBti0041666 FBti0056877 FBti0099903 FBti0036838 FBti0033604 FBti0025740 FBti0113476 FBti0013467 FBti0010879 FBti0053096 FBti0124614_1 FBti0124614_2 FBti0066541 FBti0025682 FBti0072356 FBti0109266
hide Recent Updates
Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
Update Feed
Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
atom feed
FB2012_01
FB2011_10
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
Chromosome (arm)
2L
(Thibault, 2004, Thibault, 2004)
Sequence Location
2L:6,714,248..6,714,248 [+]
(Gene Disruption Project members and Exelixis, 2005)
Orientation
-
(Thibault, 2004, Thibault, 2004)
Cytological location
(computed by FlyBase)
27A1 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
27A1 (reported as inferred from sequence location)
(Gene Disruption Project members, 2001-)
Comments concerning
location
hide Sequence Data
Flanking sequence
CZ468916
(Gene Disruption Project members, 2001-)
hide Inserted Element
Construct PBac{PB}
Location-dependent
role
deletion generation component
(Thibault et al., 2004)
carries FRT site(s)
(Thibault et al., 2004)
Size 7.257Kb
Associated alleles
w+mPB.FRT
Molecular map
hide Affected Gene(s)
Insertion may
affect gene
GRHR
(Gene Disruption Project members, 2001-)
hide Alleles and Phenotypes
Causes alleles
GRHRc03956
(Bloomington Drosophila Stock Center, 2004.11.6, Levis, 2005.11.3)
Lethality
References
viable
(Bloomington Drosophila Stock Center, 2004.11.6)
Sterility
References
fertile
(Bloomington Drosophila Stock Center, 2004.11.6)
hide Phenotype Manifest In
hide Detailed Description
Statement
Reference
hide Expression Data
Reporter Expression
Additional Information
Statement
Reference
Marker for
Reflects
expression of
hide External Images
FlyView (LinkOut)
hide Data on Genetic Line
Line ID
c03956
(Gene Disruption Project members, 2001-)
Origin as a multiple insertion line
y
(Levis and Matthews, 2006.8.8)
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 2 )
Bloomington
11320
w1118; PBac{PB}CG15443c03956 PBac{PB}GRHRc03956
Harvard
-
PBac{PB}GRHRc03956
hide Linkouts
hide Comments
Original line may have contained 3 insertions (27A1, 24F3, 85E1). The Bloomington stock does not carry a 3rd chromosome insertion.
(Levis and Matthews, 2006.8.8)
Location 2L:6714248-6714249 confirmed by FlyBase alignment of dbGSS accession CZ468916 to D. melanogaster arm Release_4 and heterochromatin Release_3.2b.
(FlyBase, 2005)
hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
PBac{PB}c03956
(Thibault, 2004, Thibault, 2004, FlyBase, 1992-)
PBac{PB}GRHRc03956
(FlyBase, 2005, FlyBase, 1992-)
Secondary FlyBase IDs
hide References ( 11 )
Research paper
Bellen et al., 2004, Genetics 167(2): 761--781
The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. [FBrf0179132]
Thibault et al., 2004, Nature Genetics 36(3): 283--287
A complementary transposon tool kit for Drosophila melanogaster using P and piggyBac. [FBrf0175002]
Supplementary material
Thibault, 2004, Nature Genetics 36(3):
Supplementary Table 2. [FBrf0174227]
Thibault, 2004, Nature Genetics 36(3):
Supplementary Table 3. [FBrf0174228]
Personal communication to FlyBase
Levis and Matthews, 2006.8.8, Sorting out Exelixis multiples.
Sorting out Exelixis multiples. [FBrf0195873]
Levis, 2005.11.3, Suspect multiple cases, Exelixis lines.
Suspect multiple cases, Exelixis lines. [FBrf0191549]
Bloomington Drosophila Stock Center, 2004.11.6, Exelixis insertion alleles that are not in FlyBase.
Exelixis insertion alleles that are not in FlyBase. [FBrf0179797]
FlyBase analysis
FlyBase, 2005, Assessment of transgenic construct insertion sites.
Assessment of transgenic construct insertion sites. [FBrf0184339]
FlyBase, 1992-, FlyBase curation
FlyBase curation. [FBrf0105495]
Computer file
Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection.
Genomic mapping of Exelixis insertion collection. [FBrf0184340]
Gene Disruption Project members, 2001-, [title not yet available]
[title not yet available] [FBrf0132177]