A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Dmel\PBac{RB}lige04268 Insertion

General Information
Symbol Dmel\PBac{RB}lige04268 Species D. melanogaster
Name FlyBase ID FBti0041802
Feature type transposable_element_insertion_site
Description
Inserted element PBac{RB} Expression data
Affected gene(s) lig Viability / fertility
Causes allele(s) lige04268 Stock availability 2 publicly available
LINE ID e04268
Genomic Location
Chromosomal location 2R ( 44A4 ) Sequence location 2R:3,955,811..3,955,811 [+]
Map ( GBrowse ) detailed view FBti0017611 FBti0055098 FBti0033806 FBti0069280 FBti0071073 FBti0021287 FBti0112950 FBti0026022 FBti0112590 FBti0021201 FBti0112241 FBti0125024_1 FBti0125024_2 FBti0115127 FBti0051126 FBti0041802 FBti0024210 FBti0034903 FBti0025778 FBti0054528 FBti0125025 FBti0066643
hide Recent Updates
Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
Update Feed
Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
atom feed
FB2012_01
FB2011_10
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
Chromosome (arm)
2R
(Thibault, 2004, Thibault, 2004)
Sequence Location
2R:3,955,811..3,955,811 [+]
(Gene Disruption Project members and Exelixis, 2005)
Orientation
+
(Thibault, 2004, Thibault, 2004)
Cytological location
(computed by FlyBase)
44A4 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
44A4 (reported as inferred from sequence location)
(Gene Disruption Project members, 2001-)
Comments concerning
location
hide Sequence Data
Flanking sequence
CZ482015
(Gene Disruption Project members, 2001-)
hide Inserted Element
Construct PBac{RB}
Location-dependent
role
deletion generation component
(Thibault et al., 2004)
carries FRT site(s)
(Thibault et al., 2004)
Size 5.971Kb
Associated alleles
Rbp1SA.RB
w+mC
Molecular map
hide Affected Gene(s)
Insertion may
affect gene
lig
(Gene Disruption Project members, 2001-, Geng and MacDonald, 2007)
hide Alleles and Phenotypes
Causes alleles
lige04268
(Bloomington Drosophila Stock Center, 2004.11.6, Gene Disruption Project members and Exelixis, 2005, Geng and MacDonald, 2007)
Lethality
References
Sterility
References
hide Phenotype Manifest In
hide Detailed Description
Statement
Reference
hide Expression Data
Reporter Expression
Additional Information
Statement
Reference
Marker for
Reflects
expression of
hide External Images
FlyView (LinkOut)
hide Data on Genetic Line
Line ID
e04268
(Gene Disruption Project members, 2001-)
Origin as a multiple insertion line
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 2 )
Bloomington
18242
w1118; PBac{RB}lige04268/CyO
Harvard
-
PBac{RB}lige04268
hide Linkouts
hide Comments
Location 2R:3580118-3580119 refined by FlyBase alignment of dbGSS accession CZ482015 to D. melanogaster arm Release_4 and heterochromatin Release_3.2b. Insertion orientation confirmed.
(FlyBase, 2005)
hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
e04268
(Geng and MacDonald, 2007)
PBac{RB}CG17977e04268
(Bloomington Drosophila Stock Center, 2004.11.6, FlyBase, 1992-)
PBac{RB}e04268
(Thibault, 2004, Thibault, 2004, FlyBase, 1992-)
PBac{RB}lige04268
(FlyBase, 2005, FlyBase, 1992-)
Secondary FlyBase IDs
hide References ( 10 )
Research paper
Geng and MacDonald, 2007, Fly 1(5): 259--267
Identification of genes that influence gurken expression. [FBrf0205043]
Bellen et al., 2004, Genetics 167(2): 761--781
The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. [FBrf0179132]
Thibault et al., 2004, Nature Genetics 36(3): 283--287
A complementary transposon tool kit for Drosophila melanogaster using P and piggyBac. [FBrf0175002]
Supplementary material
Thibault, 2004, Nature Genetics 36(3):
Supplementary Table 2. [FBrf0174227]
Thibault, 2004, Nature Genetics 36(3):
Supplementary Table 3. [FBrf0174228]
Personal communication to FlyBase
Bloomington Drosophila Stock Center, 2004.11.6, Exelixis insertion alleles that are not in FlyBase.
Exelixis insertion alleles that are not in FlyBase. [FBrf0179797]
FlyBase analysis
FlyBase, 2005, Assessment of transgenic construct insertion sites.
Assessment of transgenic construct insertion sites. [FBrf0184339]
FlyBase, 1992-, FlyBase curation
FlyBase curation. [FBrf0105495]
Computer file
Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection.
Genomic mapping of Exelixis insertion collection. [FBrf0184340]
Gene Disruption Project members, 2001-, [title not yet available]
[title not yet available] [FBrf0132177]