A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Dmel\PBac{RB}CG4199e04396 Insertion

General Information
Symbol Dmel\PBac{RB}CG4199e04396 Species D. melanogaster
Name FlyBase ID FBti0041816
Feature type transposable_element_insertion_site
Description
Inserted element PBac{RB} Expression data
Affected gene(s) CG4061, CG4199 Viability / fertility
Causes allele(s) CG4061e04396, CG4199e04396 Stock availability 2 publicly available
LINE ID e04396
Genomic Location
Chromosomal location X ( 2C10 ) Sequence location X:1,967,289..1,967,289 [-]
Map ( GBrowse ) detailed view FBti0078205 FBti0071471 FBti0057148 FBti0035006 FBti0050915 FBti0039401 FBti0075181 FBti0035689 FBti0071883 FBti0131360 FBti0131912 FBti0075193 FBti0043049 FBti0064726 FBti0041816 FBti0036322 FBti0131861 FBti0071552 FBti0012914 FBti0013124 FBti0012824 FBti0013134 FBti0071714 FBti0015527
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Description
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This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
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FB2012_01
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hide Detailed Mapping Data
Chromosome (arm)
X
(Thibault, 2004, Thibault, 2004)
Sequence Location
X:1,967,289..1,967,289 [-]
(Gene Disruption Project members and Exelixis, 2005)
Orientation
-
(Thibault, 2004, Thibault, 2004)
Cytological location
(computed by FlyBase)
2C10 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
2C10 (reported as inferred from sequence location)
(Gene Disruption Project members, 2001-)
Comments concerning
location
hide Sequence Data
Flanking sequence
CZ482158
(Gene Disruption Project members, 2001-)
hide Inserted Element
Construct PBac{RB}
Location-dependent
role
deletion generation component
(Thibault et al., 2004)
carries FRT site(s)
(Thibault et al., 2004)
Size 5.971Kb
Associated alleles
Rbp1SA.RB
w+mC
Molecular map
hide Affected Gene(s)
Insertion may
affect gene
CG4061
(Gene Disruption Project members, 2001-)
CG4199
(Gene Disruption Project members, 2001-)
hide Alleles and Phenotypes
Causes alleles
CG4061e04396
(Gene Disruption Project members and Exelixis, 2005)
CG4199e04396
(Bloomington Drosophila Stock Center, 2004.11.6, Gene Disruption Project members and Exelixis, 2005)
Lethality
References
viable
(Bloomington Drosophila Stock Center, 2004.11.6)
Sterility
References
fertile
(Bloomington Drosophila Stock Center, 2004.11.6)
hide Phenotype Manifest In
hide Detailed Description
Statement
Reference
hide Expression Data
Reporter Expression
Additional Information
Statement
Reference
Marker for
Reflects
expression of
hide External Images
FlyView (LinkOut)
hide Data on Genetic Line
Line ID
e04396
(Gene Disruption Project members, 2001-)
Origin as a multiple insertion line
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 2 )
Bloomington
18256
PBac{RB}CG4199e04396 CG4061e04396 w1118
Harvard
-
PBac{RB}CG4199e04396
hide Linkouts
hide Comments
Location X:1929412-1929413 confirmed by FlyBase alignment of dbGSS accession CZ482158 to D. melanogaster arm Release_4 and heterochromatin Release_3.2b. Insertion orientation confirmed.
(FlyBase, 2005)
hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
PBac{RB}CG4061e04396
(FlyBase, 2005, FlyBase, 1992-)
PBac{RB}CG4199e04396
(FlyBase, 1992-)
PBac{RB}e04396
(Thibault, 2004, Thibault, 2004, FlyBase, 1992-)
Secondary FlyBase IDs
hide References ( 11 )
Research paper
Bellen et al., 2004, Genetics 167(2): 761--781
The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. [FBrf0179132]
Thibault et al., 2004, Nature Genetics 36(3): 283--287
A complementary transposon tool kit for Drosophila melanogaster using P and piggyBac. [FBrf0175002]
Supplementary material
Thibault, 2004, Nature Genetics 36(3):
Supplementary Table 2. [FBrf0174227]
Thibault, 2004, Nature Genetics 36(3):
Supplementary Table 3. [FBrf0174228]
Personal communication to FlyBase
Christensen et al., 2008.7.11, Isolation and characterization of Df(1)BSC570.
Isolation and characterization of Df(1)BSC570. [FBrf0205018]
Christensen et al., 2008.12.28, Isolation and characterization of Df(1)BSC718.
Isolation and characterization of Df(1)BSC718. [FBrf0206469]
Bloomington Drosophila Stock Center, 2004.11.6, Exelixis insertion alleles that are not in FlyBase.
Exelixis insertion alleles that are not in FlyBase. [FBrf0179797]
FlyBase analysis
FlyBase, 2005, Assessment of transgenic construct insertion sites.
Assessment of transgenic construct insertion sites. [FBrf0184339]
FlyBase, 1992-, FlyBase curation
FlyBase curation. [FBrf0105495]
Computer file
Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection.
Genomic mapping of Exelixis insertion collection. [FBrf0184340]
Gene Disruption Project members, 2001-, [title not yet available]
[title not yet available] [FBrf0132177]