A Database of Drosophila Genes & Genomes

FB2008_07, released August 8, 2008
 

Dmel\PBac{WH}spn-Df01933 Insertion

General Information
Symbol Dmel\PBac{WH}spn-Df01933 Species D. melanogaster
Name FlyBase ID FBti0042058
Feature type transposable_element_insertion_site Created / Updated 2004-08-25/2005-01-05
Description
Inserted element PBac{WH} Localized function
Affected gene(s) spn-D Expression data
Causes allele(s) spn-Df01933 Viability / fertility
LINE ID f01933 Stock availability
Genomic Location
Chromosomal location 3R ( 97E6 ) Sequence location 3R:22,991,339..22,991,339 [+]
Map ( GBrowse ) detailed view FBti0042965 FBti0075272 FBti0042058 FBti0043434 FBti0046496
hide Detailed Mapping Data
Chromosome (arm)
3R
(Thibault, 2004, Thibault, 2004)
Sequence Location
3R:22,991,339..22,991,339 [+]
(Gene Disruption Project members and Exelixis, 2005)
Orientation
+
(Thibault, 2004, Thibault, 2004)
Cytological location
(computed by FlyBase)
97E6 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
97E6 (reported as inferred from sequence location)
(Gene Disruption Project members, 2001-)
Chromosome in situ
hide Sequence Data
Flanking sequence
CZ484432
(Gene Disruption Project members, 2001-)
CZ484433
(Gene Disruption Project members, 2001-)
hide Inserted Element
Construct PBac{WH}
Location-dependent
role 		 
Size 7.234Kb
Associated alleles
w+mC
TrlBRcRa
Scer\UAS14x.hs.XP
gypsy\su(Hw)BR348
Scer\UAS14x.hs.XP.Scer\FRT
Molecular map
Transposon class
Element type
hide Affected Gene(s)
Insertion within gene
Insertion may
affect gene
spn-D
(Bloomington Drosophila Stock Center, 2004.11.6)
Orientation
(relative to gene)
Gene
Orientation
References
 
 
 
hide Alleles and Phenotypes
Causes alleles
spn-Df01933
(Bloomington Drosophila Stock Center, 2004.11.6)
Lethality
References
viable
(Bloomington Drosophila Stock Center, 2004.11.6)
Sterility
References
fertile
(Bloomington Drosophila Stock Center, 2004.11.6)
hide Phenotype Manifest In
hide Detailed Description
Statement
Reference
hide Expression Data
Reporter Expression
Stage
Tissue/Position
Reference
Additional Information
Statement
Reference
Assay mode
Marker for
Reflects
expression of
hide External Images
FlyView (LinkOut)
hide Data on Genetic Line
Line ID
f01933
(Gene Disruption Project members, 2001-)
Origin as a multiple insertion line
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 2 )
Harvard
-
PBac{WH}spn-Df01933
Bloomington
18490
w1118; PBac{WH}spn-Df01933
hide Linkouts
hide Comments
Location 3R:22991339-22991340 confirmed by FlyBase alignment of dbGSS accessions CZ484433 and CZ484432 to D. melanogaster arm Release_4 and heterochromatin Release_3.2b. Insertion orientation confirmed.
(FlyBase, 2005)
hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
PBac{WH}f01933
(Thibault, 2004, Thibault, 2004, FlyBase, 1992-)
PBac{WH}spn-Df01933
(Thibault, 2004, FlyBase, 2005, FlyBase, 1992-)
Secondary FlyBase IDs
    hide References ( 11 )
    Research paper
    Bellen et al., 2004, Genetics 167(2): 761--781
    The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. [FBrf0179132]
    Thibault et al., 2004, Nature Genetics 36(3): 283--287
    A complementary transposon tool kit for Drosophila melanogaster using P and piggyBac. [FBrf0175002]
    Abdu et al., 2003, Genetics 165(1): 197--204
    The Drosophila spn-D gene encodes a RAD51C-like protein that is required exclusively during meiosis. [FBrf0162153]
    Supplementary material
    Thibault, 2004, Nature Genetics 36(3):
    Supplementary Table 2. [FBrf0174227]
    Thibault, 2004, Nature Genetics 36(3):
    Supplementary Table 3. [FBrf0174228]
    Personal communication to FlyBase
    Christensen et al., 2008.4.15, Isolation and characterization of Df(3R)BSC497.
    Isolation and characterization of Df(3R)BSC497. [FBrf0204525]
    Bloomington Drosophila Stock Center, 2004.11.6, Exelixis insertion alleles that are not in FlyBase.
    Exelixis insertion alleles that are not in FlyBase. [FBrf0179797]
    FlyBase analysis
    FlyBase, 2005, Assessment of transgenic construct insertion sites.
    Assessment of transgenic construct insertion sites. [FBrf0184339]
    FlyBase, 1992-, FlyBase curation
    FlyBase curation. [FBrf0105495]
    Computer file
    Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection.
    Genomic mapping of Exelixis insertion collection. [FBrf0184340]
    Gene Disruption Project members, 2001-, [title not yet available]
    [title not yet available] [FBrf0132177]