A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Dmel\PBac{WH}CG3156f03674 Insertion

General Information
Symbol Dmel\PBac{WH}CG3156f03674 Species D. melanogaster
Name FlyBase ID FBti0042259
Feature type transposable_element_insertion_site
Description
Inserted element PBac{WH} Expression data
Affected gene(s) CG3156 Viability / fertility
Causes allele(s) CG3156f03674 Stock availability 2 publicly available
LINE ID f03674
Genomic Location
Chromosomal location X ( 1B5 ) Sequence location X:381,973..381,973 [-]
Map ( GBrowse ) detailed view FBti0039620 FBti0107698 FBti0067629 FBti0042259 FBti0015524 FBti0068308 FBti0056580 FBti0011862 FBti0107703 FBti0031236 FBti0028786 FBti0011898 FBti0070476 FBti0021771 FBti0056122 FBti0037330 FBti0071751 FBti0049183 FBti0068482 FBti0021219 FBti0050574 FBti0034682
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Description
What does this section display?
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FB2012_01
FB2011_10
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hide Detailed Mapping Data
Chromosome (arm)
X
(Thibault, 2004, Thibault, 2004)
Sequence Location
X:381,973..381,973 [-]
(Gene Disruption Project members and Exelixis, 2005)
Orientation
-
(Thibault, 2004, Thibault, 2004)
Cytological location
(computed by FlyBase)
1B5 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
1B5 (reported as inferred from sequence location)
(Gene Disruption Project members, 2001-)
Comments concerning
location
hide Sequence Data
Flanking sequence
CZ486250
(Gene Disruption Project members, 2001-)
hide Inserted Element
Construct PBac{WH}
Location-dependent
role
deletion generation component
(Thibault et al., 2004)
mobile activating element
(Thibault et al., 2004)
carries FRT site(s)
(Thibault et al., 2004)
Size 7.234Kb
Associated alleles
gypsy\su(Hw)BR348
Scer\UAS14x.hs.XP.Scer\FRT
Scer\UAS14x.hs.XP
TrlBRcRa
w+mC
Molecular map
hide Affected Gene(s)
Insertion may
affect gene
CG3156
(Gene Disruption Project members, 2001-, Mayer et al., 2009)
hide Alleles and Phenotypes
Causes alleles
CG3156f03674
(Bloomington Drosophila Stock Center, 2004.11.6, Gene Disruption Project members and Exelixis, 2005, Mayer et al., 2009)
Lethality
References
viable
(Bloomington Drosophila Stock Center, 2004.11.6)
Sterility
References
fertile
(Bloomington Drosophila Stock Center, 2004.11.6)
hide Phenotype Manifest In
hide Detailed Description
Statement
Reference
CG3156[f03674] mutant flies show little or no difference to wild-type in whole animal fluor content in small-molecular penetration assays.
(Mayer et al., 2009)
hide Expression Data
Reporter Expression
Additional Information
Statement
Reference
Marker for
Reflects
expression of
hide External Images
FlyView (LinkOut)
hide Data on Genetic Line
Line ID
f03674
(Gene Disruption Project members, 2001-)
Origin as a multiple insertion line
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 2 )
Bloomington
18680
PBac{WH}CG3156f03674 w1118
Harvard
-
PBac{WH}CG3156f03674
hide Linkouts
hide Comments
Location X:344762-344763 confirmed by FlyBase alignment of dbGSS accession CZ486250 to D. melanogaster arm Release_4 and heterochromatin Release_3.2b. Insertion orientation confirmed.
(FlyBase, 2005)
hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
f03674
(Mayer et al., 2009)
PBac{WH}CG3156f03674
(FlyBase, 2005, FlyBase, 1992-)
PBac{WH}CG18273f03674
(Bloomington Drosophila Stock Center, 2004.11.6, FlyBase, 1992-)
PBac{WH}f03674
(Thibault, 2004, Thibault, 2004, FlyBase, 1992-)
Secondary FlyBase IDs
hide References ( 10 )
Research paper
Mayer et al., 2009, J. Neurosci. 29(11): 3538--3550
Evolutionary conservation of vertebrate blood-brain barrier chemoprotective mechanisms in Drosophila. [FBrf0207483]
Bellen et al., 2004, Genetics 167(2): 761--781
The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. [FBrf0179132]
Thibault et al., 2004, Nature Genetics 36(3): 283--287
A complementary transposon tool kit for Drosophila melanogaster using P and piggyBac. [FBrf0175002]
Supplementary material
Thibault, 2004, Nature Genetics 36(3):
Supplementary Table 2. [FBrf0174227]
Thibault, 2004, Nature Genetics 36(3):
Supplementary Table 3. [FBrf0174228]
Personal communication to FlyBase
Bloomington Drosophila Stock Center, 2004.11.6, Exelixis insertion alleles that are not in FlyBase.
Exelixis insertion alleles that are not in FlyBase. [FBrf0179797]
FlyBase analysis
FlyBase, 2005, Assessment of transgenic construct insertion sites.
Assessment of transgenic construct insertion sites. [FBrf0184339]
FlyBase, 1992-, FlyBase curation
FlyBase curation. [FBrf0105495]
Computer file
Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection.
Genomic mapping of Exelixis insertion collection. [FBrf0184340]
Gene Disruption Project members, 2001-, [title not yet available]
[title not yet available] [FBrf0132177]