A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Dmel\PBac{WH}CG10208f07143 Insertion

General Information
Symbol Dmel\PBac{WH}CG10208f07143 Species D. melanogaster
Name FlyBase ID FBti0042639
Feature type transposable_element_insertion_site
Description
Inserted element PBac{WH} Expression data
Affected gene(s) CG10208 Viability / fertility
Causes allele(s) CG10208f07143 Stock availability 2 publicly available
LINE ID f07143
Genomic Location
Chromosomal location 3R ( 95B1 ) Sequence location 3R:19,598,843..19,598,843 [+]
Map ( GBrowse ) detailed view FBti0045487 FBti0130096 FBti0115909 FBti0059002 FBti0102696 FBti0102695 FBti0107252 FBti0025017 FBti0074890 FBti0059107 FBti0127490 FBti0042639 FBti0053432 FBti0106530 FBti0029607 FBti0039164 FBti0124341 FBti0112054 FBti0036256 FBti0075881 FBti0072089 FBti0107176 FBti0055962 FBti0025198 FBti0036651 FBti0107088 FBti0143988 FBti0105642 FBti0100179 FBti0106161 FBti0011333 FBti0103920 FBti0103919 FBti0028137
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
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This section does not currently display links that were removed or gene model changes.
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FB2012_01
FB2011_10
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hide Detailed Mapping Data
Chromosome (arm)
3R
(Thibault, 2004, Thibault, 2004)
Sequence Location
3R:19,598,843..19,598,843 [+]
(Gene Disruption Project members and Exelixis, 2005)
Orientation
+
(Thibault, 2004, Thibault, 2004)
Cytological location
(computed by FlyBase)
95B1 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
95B1 (reported as inferred from sequence location)
(Gene Disruption Project members, 2001-)
95B1 (reported as inferred from sequence location)
(Parks et al., 2004)
Comments concerning
location
hide Sequence Data
Flanking sequence
CZ489925
(Gene Disruption Project members, 2001-)
CZ489926
(Gene Disruption Project members, 2001-)
hide Inserted Element
Construct PBac{WH}
Location-dependent
role
deletion generation component
(Thibault et al., 2004)
mobile activating element
(Thibault et al., 2004)
carries FRT site(s)
(Thibault et al., 2004)
Size 7.234Kb
Associated alleles
gypsy\su(Hw)BR348
Scer\UAS14x.hs.XP.Scer\FRT
Scer\UAS14x.hs.XP
TrlBRcRa
w+mC
Molecular map
hide Affected Gene(s)
Insertion may
affect gene
CG10208
(Gene Disruption Project members, 2001-)
hide Alleles and Phenotypes
Causes alleles
CG10208f07143
(Bloomington Drosophila Stock Center, 2004.11.6, Gene Disruption Project members and Exelixis, 2005)
Lethality
References
viable
(Bloomington Drosophila Stock Center, 2004.11.6)
Sterility
References
fertile
(Bloomington Drosophila Stock Center, 2004.11.6)
hide Phenotype Manifest In
hide Detailed Description
Statement
Reference
hide Expression Data
Reporter Expression
Additional Information
Statement
Reference
Marker for
Reflects
expression of
hide External Images
FlyView (LinkOut)
hide Data on Genetic Line
Line ID
f07143
(Gene Disruption Project members, 2001-)
Origin as a multiple insertion line
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 2 )
Bloomington
19051
w1118; PBac{WH}CG10208f07143
Harvard
-
PBac{WH}CG10208f07143
hide Linkouts
hide Comments
Location 3R:19598843-19598844 confirmed by FlyBase alignment of dbGSS accessions CZ489926 and CZ489925 to D. melanogaster arm Release_4 and heterochromatin Release_3.2b. Insertion orientation confirmed.
(FlyBase, 2005)
hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
PBac{WH}CG10208f07143
(Thibault, 2004, FlyBase, 2005, FlyBase, 1992-)
PBac{WH}f07143
(Thibault, 2004, Thibault, 2004, Parks et al., 2004, FlyBase, 1992-)
PBac{WH}tstf07143
(Bloomington Drosophila Stock Center, 2004.11.6, FlyBase, 1992-)
Secondary FlyBase IDs
hide References ( 11 )
Research paper
Bellen et al., 2004, Genetics 167(2): 761--781
The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. [FBrf0179132]
Parks et al., 2004, Nature Genetics 36(3): 288--292
Systematic generation of high-resolution deletion coverage of the Drosophila melanogaster genome. [FBrf0175003]
Thibault et al., 2004, Nature Genetics 36(3): 283--287
A complementary transposon tool kit for Drosophila melanogaster using P and piggyBac. [FBrf0175002]
Supplementary material
Parks et al., 2004, Nature Genetics 36(3):
Supplementary Table 2. [FBrf0174230]
Thibault, 2004, Nature Genetics 36(3):
Supplementary Table 2. [FBrf0174227]
Thibault, 2004, Nature Genetics 36(3):
Supplementary Table 3. [FBrf0174228]
Personal communication to FlyBase
Bloomington Drosophila Stock Center, 2004.11.6, Exelixis insertion alleles that are not in FlyBase.
Exelixis insertion alleles that are not in FlyBase. [FBrf0179797]
FlyBase analysis
FlyBase, 2005, Assessment of transgenic construct insertion sites.
Assessment of transgenic construct insertion sites. [FBrf0184339]
FlyBase, 1992-, FlyBase curation
FlyBase curation. [FBrf0105495]
Computer file
Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection.
Genomic mapping of Exelixis insertion collection. [FBrf0184340]
Gene Disruption Project members, 2001-, [title not yet available]
[title not yet available] [FBrf0132177]