A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Dmel\PBac{PB}Rpn2c06634 Insertion

General Information
Symbol Dmel\PBac{PB}Rpn2c06634 Species D. melanogaster
Name FlyBase ID FBti0045907
Feature type transposable_element_insertion_site
Description
Inserted element PBac{PB} Expression data
Affected gene(s) Rpn2 Viability / fertility
Causes allele(s) Rpn2c06634 Stock availability 1 publicly available
LINE ID c06634
Genomic Location
Chromosomal location 3R ( 98F13 ) Sequence location 3R:24,980,494..24,980,494 [-]
Map ( GBrowse ) GBrowse View Help detailed view FBti0128312 FBti0028833 FBti0042320 FBti0074867 FBti0029154 FBti0112119 FBti0007895_2 FBti0007895_1 FBti0011361 FBti0029185 FBti0128359 FBti0110845 FBti0045907 FBti0066902 FBti0103023 FBti0107996 FBti0110036 FBti0106433 FBti0112670 FBti0057065 FBti0110699 FBti0102968 FBti0046332 FBti0103758 FBti0021410 FBti0050707 FBti0143156
Member of Large Scale Dataset(s)
Dataset

A set of transgenic insertion stocks derived by TE mobilization using the Tni\piggyBac-based construct PBac{PB}. The PBac{PB} construct carries the w[+mC] mini-white marker flanked by short (48-bp) Scer\FRT recombination sites.
PBac{PB} insertion lines from Exelixis were remapped and assessed for inclusion in the Gene Disruption Project collection; flanking sequence data were submitted to GenBank.
(Thibault et al., 2004, Bellen et al., 2011)
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Description
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FB2013_03
FB2013_02
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Chromosome (arm)
3R
(Thibault, 2004)
Sequence Location
3R:24,980,494..24,980,494 [-]
(Gene Disruption Project members and Exelixis, 2005)
Orientation
-
(Thibault, 2004)
Cytological location
(computed by FlyBase)
98F13 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
98F13 (reported as inferred from sequence location)
(Gene Disruption Project members, 2001-)
Comments concerning
location
hide Sequence Data
Flanking sequence
CZ470877
(Gene Disruption Project members, 2001-)
hide Inserted Element
Construct PBac{PB}
Location-dependent
role
deletion generation component
(Thibault et al., 2004)
carries FRT site(s)
(Thibault et al., 2004)
Size 7.257Kb
Associated alleles
w+mPB.FRT
Molecular map
hide Affected Gene(s)
Insertion may
affect gene
Rpn2
(Gene Disruption Project members, 2001-)
hide Alleles and Phenotypes
Causes alleles
Rpn2c06634
(Gene Disruption Project members and Exelixis, 2005)
Lethality
References
Sterility
References
hide Phenotype Manifest In
hide Detailed Description
Statement
Reference
hide Expression Data
Reporter Expression
Additional Information
Statement
Reference
Marker for
Reflects
expression of
Reporter construct
used in assay
hide External Images
FlyView (LinkOut)
hide Data on Genetic Line
Line ID
c06634
(Gene Disruption Project members, 2001-)
Origin as a multiple insertion line
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 1 )
Harvard
-
PBac{PB}Rpn2c06634
hide Linkouts
hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
PBac{PB}c06634
(Thibault, 2004, FlyBase, 1992-)
PBac{PB}Rpn2c06634
(FlyBase, 1992-, )
Secondary FlyBase IDs
hide References ( 8 )
Research paper
Bellen et al., 2011, Genetics 188(3): 731--743
The Drosophila gene disruption project: progress using transposons with distinctive site specificities. [FBrf0214229]
Bellen et al., 2004, Genetics 167(2): 761--781
The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. [FBrf0179132]
Thibault et al., 2004, Nat. Genet. 36(3): 283--287
A complementary transposon tool kit for Drosophila melanogaster using P and piggyBac. [FBrf0175002]
Supplementary material
Thibault, 2004, Nature Genetics 36(3):
Supplementary Table 3. [FBrf0174228]
Personal communication to FlyBase
Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection. (Computer file)
Genomic mapping of Exelixis insertion collection. (Computer file) [FBrf0184340]
Gene Disruption Project members, 2001-, (Computer file)
(Computer file) [FBrf0132177]
FlyBase analysis
FlyBase Curators, 2013, Members of Exelixis insertion collections: P{XP}, PBac{PB}, PBac{RB}, PBac{WH}.
Members of Exelixis insertion collections: P{XP}, PBac{PB}, PBac{RB}, PBac{WH}. [FBrf0221061]
FlyBase, 1992-, FlyBase curation.
FlyBase curation. [FBrf0105495]