A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Dmel\P{XP}Hphd06295 Insertion

General Information
Symbol Dmel\P{XP}Hphd06295 Species D. melanogaster
Name FlyBase ID FBti0056087
Feature type transposable_element_insertion_site
Description
Inserted element P{XP} Expression data
Affected gene(s) Hph Viability / fertility
Causes allele(s) Hphd06295 Stock availability 1 publicly available
LINE ID d06295
Genomic Location
Chromosomal location 3R ( 82F8 ) Sequence location 3R:1,089,724..1,089,724 [+]
Map ( GBrowse ) GBrowse View Help detailed view FBti0019303 FBti0125909_2 FBti0125909_1 FBti0007865 FBti0021602 FBti0110683 FBti0042294 FBti0047896 FBti0125910_2 FBti0125910_1 FBti0056087 FBti0112330 FBti0029842 FBti0029658 FBti0105259 FBti0105305 FBti0105436 FBti0046786 FBti0103270 FBti0068963 FBti0109790 FBti0068941 FBti0069813 FBti0103133 FBti0106692 FBti0027934 FBti0029382 FBti0111365 FBti0104604 FBti0106098 FBti0034978 FBti0105630 FBti0035265 FBti0011376 FBti0112153 FBti0040045 FBti0028204 FBti0108378 FBti0054005 FBti0103475 FBti0105282 FBti0070400 FBti0035918 FBti0049515 FBti0053109 FBti0005451 FBti0054113 FBti0048882 FBti0057863 FBti0048431
Member of Large Scale Dataset(s)
Dataset

A set of transgenic insertion stocks derived by TE mobilization using the P-element construct P{XP}. The P{XP} construct carries the w[+mC] mini-white marker, long (199-bp) Scer\FRT sites, and is designed to allow flexible use of Scer\UAS sites for Scer\GAL4-driven misexpression of adjacent genes. FRT sites allow Scer\FLP-mediated recombination between other FRT-containing elements, and thus can be used to generate molecularly defined deletions.
P{XP} insertion lines from Exelixis were remapped and assessed for inclusion in the Gene Disruption Project collection; flanking sequence data were submitted to GenBank.
(Thibault et al., 2004, Bellen et al., 2011)
hide Recent Updates
Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
Update Feed
Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
atom feed
FB2013_03
FB2013_02
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
Chromosome (arm)
3R
(Thibault, 2004)
Sequence Location
3R:1,089,724..1,089,724 [+]
(Gene Disruption Project members and Exelixis, 2005)
Orientation
+
(Thibault, 2004)
Cytological location
(computed by FlyBase)
82F8 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
82F8 (reported as inferred from sequence location)
(Gene Disruption Project members, 2001-)
Comments concerning
location
hide Sequence Data
Flanking sequence
CZ475038
(Gene Disruption Project members, 2001-)
hide Inserted Element
Construct P{XP}
Location-dependent
role
deletion generation component
(Thibault et al., 2004)
mobile activating element
(Thibault et al., 2004)
carries FRT site(s)
(Thibault et al., 2004)
Size 7.303Kb
Associated alleles
gypsy\su(Hw)BR348
Scer\UAS14x.hs.XP.Scer\FRT
Scer\UAS14x.hs.XP
TrlBRcRa
w+mC
Molecular map
hide Affected Gene(s)
Insertion may
affect gene
Hph
(FlyBase Curators, 2008)
hide Alleles and Phenotypes
Causes alleles
Hphd06295
(FlyBase Curators, 2008)
Lethality
References
Sterility
References
hide Phenotype Manifest In
hide Detailed Description
Statement
Reference
hide Expression Data
Reporter Expression
Additional Information
Statement
Reference
Marker for
Reflects
expression of
Reporter construct
used in assay
hide External Images
FlyView (LinkOut)
hide Data on Genetic Line
Line ID
d06295
(Gene Disruption Project members, 2001-)
Origin as a multiple insertion line
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 1 )
Harvard
-
P{XP}Hphd06295
hide Linkouts
hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
P{XP}d06295
(Thibault, 2004, FlyBase, 1992-)
P{XP}Hphd06295
 
Secondary FlyBase IDs
hide References ( 10 )
Research paper
Bellen et al., 2011, Genetics 188(3): 731--743
The Drosophila gene disruption project: progress using transposons with distinctive site specificities. [FBrf0214229]
Bellen et al., 2004, Genetics 167(2): 761--781
The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. [FBrf0179132]
Thibault et al., 2004, Nat. Genet. 36(3): 283--287
A complementary transposon tool kit for Drosophila melanogaster using P and piggyBac. [FBrf0175002]
Supplementary material
Thibault, 2004, Nature Genetics 36(3):
Supplementary Table 3. [FBrf0174228]
Personal communication to FlyBase
Gresens and Cook, 2006.3.8, Isolation and characterization of Df(3R)BSC139.
Isolation and characterization of Df(3R)BSC139. [FBrf0191684]
Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection. (Computer file)
Genomic mapping of Exelixis insertion collection. (Computer file) [FBrf0184340]
Gene Disruption Project members, 2001-, (Computer file)
(Computer file) [FBrf0132177]
FlyBase analysis
FlyBase Curators, 2013, Members of Exelixis insertion collections: P{XP}, PBac{PB}, PBac{RB}, PBac{WH}.
Members of Exelixis insertion collections: P{XP}, PBac{PB}, PBac{RB}, PBac{WH}. [FBrf0221061]
FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations.
Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955]
FlyBase, 1992-, FlyBase curation.
FlyBase curation. [FBrf0105495]