A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Dmel\P{XP}larpd07135 Insertion

General Information
Symbol Dmel\P{XP}larpd07135 Species D. melanogaster
Name FlyBase ID FBti0057507
Feature type transposable_element_insertion_site
Description
Inserted element P{XP} Expression data
Affected gene(s) larp Viability / fertility
Causes allele(s) Stock availability none publicly available
LINE ID d07135
Genomic Location
Chromosomal location 3R ( 98C4 ) Sequence location 3R:24,152,465..24,152,465 [-]
Map ( GBrowse ) GBrowse View Help detailed view FBti0067553 FBti0050993 FBti0150242 FBti0143781 FBti0050264 FBti0025607 FBti0037056 FBti0049728 FBti0046483 FBti0126325 FBti0099917 FBti0029914 FBti0108596 FBti0104257 FBti0055722 FBti0108386 FBti0036063 FBti0113012 FBti0108084 FBti0028086 FBti0059384 FBti0111117 FBti0054013 FBti0005558 FBti0057507 FBti0103213 FBti0049992 FBti0067367 FBti0143695 FBti0143632 FBti0046952 FBti0058115 FBti0053267 FBti0106538 FBti0107991 FBti0105670 FBti0105785 FBti0131802 FBti0067314 FBti0044002 FBti0034626 FBti0027328 FBti0034015 FBti0028648
Member of Large Scale Dataset(s)
Dataset

A set of transgenic insertion stocks derived by TE mobilization using the P-element construct P{XP}. The P{XP} construct carries the w[+mC] mini-white marker, long (199-bp) Scer\FRT sites, and is designed to allow flexible use of Scer\UAS sites for Scer\GAL4-driven misexpression of adjacent genes. FRT sites allow Scer\FLP-mediated recombination between other FRT-containing elements, and thus can be used to generate molecularly defined deletions.
P{XP} insertion lines from Exelixis were remapped and assessed for inclusion in the Gene Disruption Project collection; flanking sequence data were submitted to GenBank.
(Thibault et al., 2004, Bellen et al., 2011)
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Description
What does this section display?
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FB2013_03
FB2013_02
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hide Detailed Mapping Data
Chromosome (arm)
Sequence Location
3R:24,152,465..24,152,465 [-]
(Gene Disruption Project members and Exelixis, 2005)
Orientation
Cytological location
(computed by FlyBase)
98C4 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
98C4 (reported as inferred from sequence location)
(Gene Disruption Project members, 2001-)
98C4 (reported as inferred from sequence location)
(Parks et al., 2004)
Comments concerning
location
hide Sequence Data
Flanking sequence
CZ475554
(Gene Disruption Project members, 2001-)
hide Inserted Element
Construct P{XP}
Location-dependent
role
deletion generation component
(Thibault et al., 2004)
mobile activating element
(Thibault et al., 2004)
carries FRT site(s)
(Thibault et al., 2004)
Size 7.303Kb
Associated alleles
gypsy\su(Hw)BR348
Scer\UAS14x.hs.XP.Scer\FRT
Scer\UAS14x.hs.XP
TrlBRcRa
w+mC
Molecular map
hide Affected Gene(s)
Insertion may
affect gene
larp
(Gene Disruption Project members, 2001-)
hide Alleles and Phenotypes
Causes alleles
Lethality
References
Sterility
References
hide Phenotype Manifest In
hide Detailed Description
Statement
Reference
hide Expression Data
Reporter Expression
Additional Information
Statement
Reference
Marker for
Reflects
expression of
Reporter construct
used in assay
hide External Images
FlyView (LinkOut)
hide Data on Genetic Line
Line ID
d07135
(Gene Disruption Project members, 2001-)
Origin as a multiple insertion line
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 0 )
hide Linkouts
hide Comments
Location 3R:24152465-24152466 confirmed by FlyBase alignment of dbGSS accession CZ475554 to D. melanogaster arm Release_4 and heterochromatin Release_3.2b. Insertion orientation confirmed.
(FlyBase, 2005)
hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
P{XP}d07135
(Parks et al., 2004, FlyBase, 1992-)
P{XP}larpd07135
(FlyBase, 2005, FlyBase, 1992-, )
Secondary FlyBase IDs
hide References ( 10 )
Research paper
Bellen et al., 2011, Genetics 188(3): 731--743
The Drosophila gene disruption project: progress using transposons with distinctive site specificities. [FBrf0214229]
Bellen et al., 2004, Genetics 167(2): 761--781
The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. [FBrf0179132]
Parks et al., 2004, Nat. Genet. 36(3): 288--292
Systematic generation of high-resolution deletion coverage of the Drosophila melanogaster genome. [FBrf0175003]
Thibault et al., 2004, Nat. Genet. 36(3): 283--287
A complementary transposon tool kit for Drosophila melanogaster using P and piggyBac. [FBrf0175002]
Supplementary material
Parks et al., 2004, Nature Genetics 36(3):
Supplementary Table 2. [FBrf0174230]
Personal communication to FlyBase
Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection. (Computer file)
Genomic mapping of Exelixis insertion collection. (Computer file) [FBrf0184340]
Gene Disruption Project members, 2001-, (Computer file)
(Computer file) [FBrf0132177]
FlyBase analysis
FlyBase Curators, 2013, Members of Exelixis insertion collections: P{XP}, PBac{PB}, PBac{RB}, PBac{WH}.
Members of Exelixis insertion collections: P{XP}, PBac{PB}, PBac{RB}, PBac{WH}. [FBrf0221061]
FlyBase, 2005, Assessment of transgenic construct insertion sites.
Assessment of transgenic construct insertion sites. [FBrf0184339]
FlyBase, 1992-, FlyBase curation.
FlyBase curation. [FBrf0105495]