A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Dmel\P{EPg}HP36293 Insertion

General Information
Symbol Dmel\P{EPg}HP36293 Species D. melanogaster
Name FlyBase ID FBti0074895
Feature type transposable_element_insertion_site
Description
Inserted element P{EPg} Expression data
Affected gene(s) Viability / fertility
Causes allele(s) Stock availability 1 publicly available
LINE ID HP36293
Genomic Location
Chromosomal location 3R ( 94A6 ) Sequence location 3R:18,188,359..18,188,359 [+]
Map ( GBrowse ) detailed view FBti0111202 FBti0042262_1 FBti0074808 FBti0011675 FBti0126210 FBti0099927 FBti0037029 FBti0009929 FBti0039416 FBti0007851 FBti0074895 FBti0110525 FBti0066088 FBti0045988 FBti0068175 FBti0053243 FBti0056571 FBti0111115 FBti0055995 FBti0108787 FBti0113338 FBti0110986 FBti0100114 FBti0040105 FBti0104695 FBti0111805 FBti0112170 FBti0034961 FBti0110373 FBti0106946 FBti0106391 FBti0103011 FBti0105858 FBti0055869 FBti0070060 FBti0009965 FBti0072331 FBti0112181 FBti0034712 FBti0052700
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
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This section does not currently display links that were removed or gene model changes.
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FB2012_01
FB2011_10
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
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Chromosome (arm)
Sequence Location
3R:18,188,359..18,188,359 [+]
Orientation
Cytological location
(computed by FlyBase)
94A6 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
Comments concerning
location
The location specified is that of the genomic sequence nucleotide that aligns with the 5' end of the flanking sequence deposited by Staudt et al. (2005) in GenBank. The GenBank records do not specify the position of the insertion within the flanking sequence so there is ambiguity in the insertion position.
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Flanking sequence
hide Inserted Element
Construct P{EPg}
Location-dependent
role
mobile activating element (UASG)
Size 8.057Kb
Associated alleles
Molecular map
hide Affected Gene(s)
Insertion may
affect gene
hide Alleles and Phenotypes
Causes alleles
Lethality
References
Sterility
References
hide Phenotype Manifest In
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Statement
Reference
hide Expression Data
Reporter Expression
Additional Information
Statement
Reference
Marker for
Reflects
expression of
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FlyView (LinkOut)
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Line ID
HP36293
Origin as a multiple insertion line
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 1 )
Bloomington
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hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
HP36293
P{EPg}HP36293
Secondary FlyBase IDs
hide References ( 5 )
Research paper
Staudt et al., 2005, PLoS Gen. 1(4): 499--506
Gain-of-function screen for genes that affect Drosophila muscle pattern formation. [FBrf0191391]
Mata et al., 2000, Cell 101(5): 511--522
Tribbles coordinates mitosis and morphogenesis in Drosophila by regulating string/CDC25 proteolysis. [FBrf0128569]
Supplementary material
Staudt et al., 2005, PLoS Genet. 1(4):
Table S2. [FBrf0208297]
Personal communication to FlyBase
Levis, 2009.8.13, Release 5 sequence localizations for HP and DP lines.
Release 5 sequence localizations for HP and DP lines. [FBrf0208533]
FlyBase analysis
FlyBase, 1992-, FlyBase curation
FlyBase curation. [FBrf0105495]