A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Dmel\P{EPg}Spn6HP25975 Insertion

General Information
Symbol Dmel\P{EPg}Spn6HP25975 Species D. melanogaster
Name FlyBase ID FBti0075060
Feature type transposable_element_insertion_site
Description
Inserted element P{EPg} Expression data
Affected gene(s) Spn6 Viability / fertility
Causes allele(s) Spn6HP25975 Stock availability 1 publicly available
LINE ID HP25975
Genomic Location
Chromosomal location 2R ( 55B7 ) Sequence location 2R:14,013,813..14,013,813 [-]
Map ( GBrowse ) detailed view FBti0024312 FBti0025538 FBti0068165 FBti0125262_2 FBti0125262_1 FBti0115151 FBti0005149 FBti0111581 FBti0035184 FBti0115128 FBti0108049 FBti0075060 FBti0033901 FBti0026411 FBti0110278 FBti0034792 FBti0023152 FBti0055892 FBti0039861 FBti0029405 FBti0021111 FBti0102550 FBti0075948 FBti0045960 FBti0125263_2 FBti0125263_1 FBti0005230 FBti0103033 FBti0072639 FBti0051077 FBti0003305 FBti0110418 FBti0066342 FBti0066447 FBti0039888 FBti0005368 FBti0113498 FBti0026235 FBti0115174
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
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FB2012_01
FB2011_10
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
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Chromosome (arm)
Sequence Location
2R:14,013,813..14,013,813 [-]
Orientation
Cytological location
(computed by FlyBase)
55B7 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
Comments concerning
location
The location specified is that of the genomic sequence nucleotide that aligns with the 5' end of the flanking sequence deposited by Staudt et al. (2005) in GenBank. The GenBank records do not specify the position of the insertion within the flanking sequence so there is ambiguity in the insertion position.
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Flanking sequence
hide Inserted Element
Construct P{EPg}
Location-dependent
role
mobile activating element (UASG)
Size 8.057Kb
Associated alleles
Molecular map
hide Affected Gene(s)
Insertion may
affect gene
hide Alleles and Phenotypes
Causes alleles
Lethality
References
Sterility
References
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Statement
Reference
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Reporter Expression
Additional Information
Statement
Reference
Marker for
Reflects
expression of
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FlyView (LinkOut)
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Line ID
HP25975
Origin as a multiple insertion line
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 1 )
Bloomington
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hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
HP25975
P{EPg}HP25975
P{EPg}Spn6HP25975
 
Secondary FlyBase IDs
hide References ( 5 )
Research paper
Staudt et al., 2005, PLoS Gen. 1(4): 499--506
Gain-of-function screen for genes that affect Drosophila muscle pattern formation. [FBrf0191391]
Mata et al., 2000, Cell 101(5): 511--522
Tribbles coordinates mitosis and morphogenesis in Drosophila by regulating string/CDC25 proteolysis. [FBrf0128569]
Supplementary material
Staudt et al., 2005, PLoS Genet. 1(4):
Table S2. [FBrf0208297]
Personal communication to FlyBase
Levis, 2009.8.13, Release 5 sequence localizations for HP and DP lines.
Release 5 sequence localizations for HP and DP lines. [FBrf0208533]
FlyBase analysis
FlyBase, 1992-, FlyBase curation
FlyBase curation. [FBrf0105495]