A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Dmel\P{EPg}CG3160HP11195 Insertion

General Information
Symbol Dmel\P{EPg}CG3160HP11195 Species D. melanogaster
Name FlyBase ID FBti0075140
Feature type transposable_element_insertion_site
Description
Inserted element P{EPg} Expression data
Affected gene(s) CG3160 Viability / fertility
Causes allele(s) CG3160HP11195 Stock availability 1 publicly available
LINE ID HP11195
Genomic Location
Chromosomal location X ( 5A12 ) Sequence location X:5,583,435..5,583,435 [+]
Map ( GBrowse ) detailed view FBti0071706 FBti0066765 FBti0107637 FBti0036826 FBti0007448 FBti0028866 FBti0055116 FBti0029698 FBti0069245 FBti0030351 FBti0109460 FBti0113521 FBti0017150 FBti0055987 FBti0040146 FBti0030212 FBti0029585 FBti0104273 FBti0007320 FBti0035185 FBti0037298 FBti0013458 FBti0013457 FBti0071874 FBti0132357 FBti0049811 FBti0075140 FBti0071673 FBti0033788 FBti0034535 FBti0011887 FBti0039327 FBti0071353 FBti0069189 FBti0056171 FBti0075180 FBti0053467 FBti0048555 FBti0051386
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
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FB2012_01
FB2011_10
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
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Chromosome (arm)
Sequence Location
X:5,583,435..5,583,435 [+]
Orientation
Cytological location
(computed by FlyBase)
5A12 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
Comments concerning
location
The location specified is that of the genomic sequence nucleotide that aligns with the 5' end of the flanking sequence deposited by Staudt et al. (2005) in GenBank. The GenBank records do not specify the position of the insertion within the flanking sequence so there is ambiguity in the insertion position.
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Flanking sequence
hide Inserted Element
Construct P{EPg}
Location-dependent
role
mobile activating element (UASG)
Size 8.057Kb
Associated alleles
Molecular map
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Insertion may
affect gene
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Causes alleles
Lethality
References
Sterility
References
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Statement
Reference
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Reporter Expression
Additional Information
Statement
Reference
Marker for
Reflects
expression of
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FlyView (LinkOut)
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Line ID
HP11195
Origin as a multiple insertion line
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hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 1 )
Bloomington
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Reported As
Symbol Synonym
HP11195
P{EPg}CG3160HP11195
P{EPg}HP11195
Secondary FlyBase IDs
hide References ( 6 )
Research paper
Staudt et al., 2005, PLoS Gen. 1(4): 499--506
Gain-of-function screen for genes that affect Drosophila muscle pattern formation. [FBrf0191391]
Mata et al., 2000, Cell 101(5): 511--522
Tribbles coordinates mitosis and morphogenesis in Drosophila by regulating string/CDC25 proteolysis. [FBrf0128569]
Supplementary material
Staudt et al., 2005, PLoS Genet. 1(4):
Table S2. [FBrf0208297]
Personal communication to FlyBase
Levis, 2009.8.13, Release 5 sequence localizations for HP and DP lines.
Release 5 sequence localizations for HP and DP lines. [FBrf0208533]
Matthews, 2008.4.15, DP and HP P-element insertions submitted to the Bloomington Drosophila Stock Center.
DP and HP P-element insertions submitted to the Bloomington Drosophila Stock Center. [FBrf0204789]
FlyBase analysis
FlyBase, 1992-, FlyBase curation
FlyBase curation. [FBrf0105495]