Transcript Dmel\sdk-RC

General Information
Symbol	Dmel\sdk-RC	Species	D. melanogaster
Annotation Symbol	CG5227-RC	FlyBase ID	FBtr0070131
Feature type	mRNA	Associated gene	Dmel\sdk

Evidence Rank	Moderately Supported	Length (nt)	8984
Evidence Score	7

Map ( GBrowse )
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
cDNA Clones Consistent with the Transcript ( 72 )
cDNA Clones, Fully Sequenced
Exact Match
Contained within the annotated transcript, internally consistent
End(s) extend beyond the annotated transcript, internally consistent
cDNA Clones, End Sequence Only (ESTs)
Contained within the annotated transcript, internally consistent	15015 31183 31222 33121 33831 35774 36456 50524 78499 161859 176264 181567 214571.6 273923 CK01.17C.C7 CK01.24D.E4 CK01.59D.H12 CK01.87A.H7 DMG4-chrX.2.003.pred.a DMG7-chrX.2.003.pred.a EK022138 EK048462 EK068632 EK104962 EK136005 EK140415 EK142851 EK145915 EK147233 EK148562 EK176337 EK193901 EK194559 EK207948 EK266096 EK276850 EK280755 EK286529 EK286905 EK288304 EK295308 EK298625 EK301034 EP11413 FGM235A11 GM02010 IP16111 LD04144 LD21779 LD22445 LD26517 LD38885 LD42472 RP004023067 RP004029188 RP004090178 RP004158213 RP004176498 RP004201728 RP004201755 RP004239910 RP004248070 RP004250141 RP004305641 RP004316895 RP004403115 RP004417558 RP004516748 RP004541988 RP004558989
End(s) extend beyond the annotated transcript, internally consistent	214577.5 ESG014a.E21_G05
Sequence
	CAGCGCAGTTCGTTTTGTGCGCGCGTAGTGAACGGTTGTCTTTCGGTTGC TCGTCGGGGAGTTGCAAATTCAGCGACAGCAGCAACTACAAATGGCGACT TGTGCCTGTCGGACCCTCGAGTTCATTGTTAATTGTTAATCGTTGTGGTG CTAAGCGTTGGCCGAACGGTTTATGGGTATATGGTAACCCTGGTGGCAGA AAGAAGAACATACTTGTGTCCAGAAGGAAGGAGGAAAAGCAGTAAGCGCG CACCTTTCGCGTTTCTTTCGCACCGCACCGATCGCGTTTTTTTCCAAAAA AGATGTGAGCGATGTGTAATTAAAACTAGACTTTTCACTAAAAACTAGAA GAGCGAAGGAAGGCCGCTAAGAAAACAAAGCGAAATCCCAGAAATACGAA TACCGAAAGGCAACAACAAATGCTCAAATCTGCGGCGTCGTCGCTGCGTC GACGTCGTCCAAAAACAACAATAACAGCAACATTAGCCATCGAGATGCCG TCGCAGCCGAAGTTGGCGTCTCTGCTTGCAGTGCTGGTTTTGCTCTGCTA CTGCGACAGCTGCTTTTTTTGTTACGCGGATGCCAATCTACAGCAGCAGA ATTCAATCGTTCAACAGCAGCAACTTCAGGCTCCTCGGTTTACCACACAT CCATCGTCATCGGGATCGATTGTCAGCGAGGGCAGCACCAAGATACTTCA GTGTCATGCGCTGGGATACCCGCAACCCACATATCGATGGCTAAAGGACG GCGTCCCCGTGGGCGACTTCTCATCCAGCCAGTTCTACCGATTCCACAGC ACCCGGCGCGAGGATGCGGGCAGCTATCAGTGCATCGCCAGAAATGATGC CGGATCCATATTCAGCGAAAAGAGCGACGTCGTCGTGGCCTACATGGGCA TCTTTGAGAACACCACAGAGGGTCGTCTGACGGTGATCAGTGGTCACCCT GCGATATTCGATATGCCCCCCATTTGAATCCATACCCGTGCCGTCGGTTA TGTGGCAATCGGAGGATGGACCTCTGAATTACGACATCAAGTACGCCTTC ACCCACGCCAACCAGTTAATTATTTTAAGTGCTGACGAAAACGATCGCAA GGGATACCGGGCTAAGGCCATTAACACGCAGTTGGGCAAAGAGGAGAGCA GCGCCTTTGTGCACCTGAACGTCAGTGGAGATCCGTACATCGAGGTGGCG CCCGAAATCATAGTGCGCCCGCAGGACGTTAAGGTCAAAGTTGGTACCGG AGTGGTTGAGCTGCAGTGCATTGCGAATGCCAGGCCCTTGCACGAACTGG AGACGCTTTGGCTGAAAGACGGTCTCGCCGTAGAAACTGCCGGAGTGAGG CACACTCTCAACGATCCATGGAATCGAACGTTGGCCCTGCTGCAGGCGAA CAGCTCACATTCCGGGGAATACACCTGCCAGGTGCGATTGCGCAGTGGTG GCTACCCAGCCGTCAGTGCTTCGGCTCGCCTCCAAATCCTCGAGCCGCCG CTCTTTTTTACACCCATGCGGGCGGAAACCTTTGGCGAATTCGGAGGACA GGTGCAGCTAACCTGCGATGTGGTCGGCGAACCCACGCCCCAGGTCAAGT GGTTCAGGAACGCAGAATCGGTGGATGCACACATTGAGAGTGGAAGATAC ACGTTGAACACGGATAATACGCTGGTAATTAAGAAACTAATCCTGGATGA TGCTGCCATGTTTCAGTGTTTGGCCATCAACGAAGCGGGGGAGAATTCGG CGAGCACCTGGCTGCGCGTAAAAACATCGGCTCCAATTATGGAGCTGCCG CCCCAAAATGTGACCGCCTTGGATGGCAAGGACGCAACTATTTCCTGCCG GGCAGTTGGATCGCCCAATCCCAACATAACCTGGATATACAATGAGACAC AACTGGTAGATATATCCAGCCGGGTGCAGATACTTGAGTCGGGTGACCTG CTCATCTCGAACATCCGATCTGTGGACGCCGGCCTGTATATCTGCGTACG AGCCAACGAGGCGGGCAGCGTCAAGGGCGAGGCCTATTTGAGTGTTTTGG TGCGGACGCAAATCATCCAACCGCCTGTGGACACAACGGTGCTACTTGGC TTAACGGCCACCCTGCAGTGCAAGGTGTCCAGTGATCCCAGTGTCCCGTA CAACATCGACTGGTATCGCGAGGGTCAGTCGTCGACGCCCATCAGTAATT CGCAGCGCATTGGTGTCCAGGCGGACGGTCAGCTAGAGATCCAAGCGGTG CGGGCGAGCGACGTCGGGAGTTATGCCTGTGTGGTCACTTCTCCCGGGGG AAATGAGACGCGAGCCGCCCGCCTCAGTGTCATCGAACTCCCGTTCCCAC CCAGCAATGTGAAGGTGGAACGACTGCCGGAACCGCAACAGCGCAGCATC AACGTGTCCTGGACTCCGGGATTCGATGGCAACAGTCCAATATCCAAATT TATTATCCAGCGACGTGAGGTCTCAGAATTGGAAAAATTCGTAGGTCCAG TTCCAGACCCTCTGCTCAACTGGATTACCGAGCTGAGCAATGTCTCGGCG GACCAACGTTGGATCCTGCTCGAAAATCTCAAGGCGGCCACCGTTTATCA GTTTAGGGTTAGTGCTGTCAATCGGGTGGGCGAGGGTTCGCCATCGGAAC CCAGTAACGTCGTCGAGCTGCCCCAGGAAGCTCCTTCGGGTCCACCGGTG GGATTTGTTGGATCCGCCCGCTCGATGTCAGAGATCATCACGCAATGGCA GCCACCGTTGGAGGAGCATCGCAATGGCCAGATCCTGGGATACATTCTGC GGTACCGCCTATTCGGTTACAACAATGTGCCTTGGTCCTACCAGAATATT ACAAACGAAGCGCAGCGCAACTTCCTGATTCAAGAACTGATCACCTGGAA GGATTACATCGTGCAGATCGCAGCATACAACAACATGGGCGTGGGTGTCT ACACCGAGGGCTCCAAAATTAAAACCAAGGAAGGAGTTCCAGAAGCACCC CCCACAAATGTAAAAGTAGAAGCTATAAACTCGACGGCAGCCAGGTGCCG GTGGACTCCACCCAATCCGCAGCAGATTAACGGCATCAACCAGGGCTATA AGATCCAGGCATGGCAACGTCGGTTGATAGATGGCGAGTGGAGGGACATT GAGCGACGAATGAAGACAGTGCCACCTAGTCTGATTGATCCACTGGCGGA ACAGACAGCTATCCTCGGAGGACTTGAAAAATTTACCGAGTACAATATTA GTGTGCTCTGCTTCACGGACCCTGGCGATGGTGTGGCCAGTAGTCAAGTG GCAGTTATGACCATGGATGACGTACCCGACGAGGTGACTGGATTGCATTT CGATGACGTCTCCGATAGATCCGTAAAAGTTCTATGGGCGCCACCGCGCG CTTCGAACGGTATCCTAACGGGCTATACGGTTCGCTACCAAGTCAAGGAT CGTCCAGATACCCTGAAATCCTTTAATCTGACAGCGGATGATACAGAGTT GACAGTGAACCAATTGCAGGCTACCACGCACTATTGGTTTGAGATCGTCG CGTGGACGCGTGTGGGCAGTGGAATTCCGAAAACAGCCACCATTCAGTCT GGCGTAGAGCCAGTTCTGCCGCACGCACCCACTGCTCTGGCATTATCCAA TATCGAAGCCTTCTCTGTTGTTCTGCAGTTCACTCCGGGCTTTGATGGCA ACTCCAGCATTACCAAATGGAAAGTGGAGGGACAAACGGCCAGAAATATG ACATGGTTTACCATTTGCGAGATTAATGATCCCGATGCAGAGACCTTGAC CGTCACTGGCTTGGTGCCGTTTACCCAGTACAGACTGAGATTGAGTGCTA GTAATGTGGTTGGTAGCTCGAAGCCCTCGGAGGCAACCAAGGATTTCCAG ACGATCCAAGCCAGGCCCAAACATCCACCGTTTAACGTAACCGTGCGGGC AATGAGTGCTCAACAACTGCGTGTTCGCTGGATTCCACTGCAACAAACTG AATGGTATGGAAATCCCAGGGGCTATAATATATCCTACAAGCAGCTGGTC AAAACTCCCGGGACCATTAAATACGTACCCCGGTCGGTGGTAATCGAAGA TCACACCGCCAACTCCCACGTGTTAGATAGCCTGGAGGAGTGGACACTGT ATGAGGTGAAAATGAATGCCTGCAACGATGTGGGATGTTCTAAAGAGAGT GACACTGCCGTGGAGAGAACTCGCGAAGCTGTTCCTAGCTATGGACCCCT GGATGTCCAGGCTAATGCCACATCATCCACCACAGTGGTTGTGCAATGGG GTGAGGTGCCCCGACAACACAGAAATGGTCAGATAGATGGCTACAAGGTG TTCTATGCCGCTGCAGATCGGGGACAACAGGTGCTGCACAAGACGATACC CAATAACGCCACATTTACCACAACCTTGACGGAACTGAAAAAATATGTGG TTTACCATGTTCAGGTTCTGGCCTACACCAGATTGGGTAATGGTGCTCTA AGCACCCCACCCATTCGAGTTCAGACCTTTGAGGATACCCCTGGAGTGCC ATCGAACGTTAGTTTTCCGGATGTCTCCTTGACCATGGCTCGCATAATTT GGGATGTGCCTGTGGATCCTAATGGCAAGATCTTGGCTTATCAGGTCACG TACACATTAAATGGTAGTGCCATGCTGAACTACAGCCGAGAGTTTCCGCC TTCCGATCGCACATTCCGGGCGACGGAATTACTTCCCGGAAAGTATTACA GCTTTAGTTGTACGGCTCAAACGCGACTGGGATGGGGAAAAATAGCTACT GCTCTCGTGTACACTACAAACAACAGGGAGAGACCTCAGGCACCTTCGGT TCCGCAAATATCACGCAGTCAGATTCAGGCCCATCAAATCACCTTCAGTT GGACACCAGGAAGAGATGGCTTTGCGCCACTTCGCTACTACACAGTGGAA ATGCGTGAAAACGAGGGCAGGTGGCAACCACTTCCAGAGAGGGTGGATCC ATCTCTTAGTTCCTTTACAGCAGTTGGTCTGAGACCCTATATGACATATC AATTCCGCATACAGGCCACCAATGACTTGGGACCATCCGCCTTTAGTCGG GAAAGTGTGATCGTGAGAACTTTACCCGCTGCTCCGGCAGTGGGAGTTGG AGGTCTCAAGGTAGTTCCCATAACCACAACTTCGGTGAGGGTGCAATGGA GTGCTCTGGAGACTGCATTGTGGAATGGTGATGCCTCAACTGGTGGCTAC AGGATTTTATATCAACAACTTTCCGATTTCCCCACCGCCCTGCAGTCTAC ACCCAAAACGGATGTGCACGGCATCAATGAGAACAGTGTGGTTCTGTCGG ATCTTCAACAGGATCGCAACTATGAAATTGTGGTGCTACCATTTAATTCC CAGGGCCCTGGGCCAGCCACACCCCCAGCAGCGGTCTATGTGGGCGAAGC GGTGCCGACTGGGGAACCGAGAGCCGTAGATGCAGCACCCATTTCCAGCA CAGAAGTGCGATTACTGTGGAAGCCACCAAAGCAGAGCATGCAGAATGGA GATATTTTAGGATATAAGATCTACTACCTGGTTACTTATTCACCGCAAGC GTTGGAACCAGGTCGCAAATGGGAGGAGGAAATCGAGGTTGTTTCGGCCA CGGCAACTTCGCACAGTCTCGTGTTCCTTGATAAGTTCACCGAGTATCGC ATCCAACTGCTGGCCTTCAATCCGGCGGGAGATGGACCACGATCCGCCCC AATTACCGTGAAAACACTGCCAGGAGTACCAAGTGCTCCACTTCACCTTA GATTTTCAGATATCACTATGCAGAGTTTGGAGGTTACCTGGGATCCACCA AAGTTCCTCAACGGTGAAATCTTGGGGTACTTAGTCACGTACGAAACCAC CGAGGAGAATGAAAAGTTCAGCAAGCAAGTGAAACAAAAGGTATCTAATA CAACACTGCGTGTTCAAAATCTCGAGGAAGAGGTCACCTACACATTCACT GTCCGTGCTCAAACGTCCGTCGATTACGGCCCGGGTATAAGTGAGAATGT GACGACAGGACCCCAAGATGGATCCCCAGTTGCGCCGCGTGATCTCATCC TGACCAAGACGCTATCCAGCGTGGAAATGCATTGGATAAATGGTCCTTCT GGGCGGGGACCCATTTTGGGCTATCTTATCGAGGCAAAGAAGCGAGAAAA AGGAGAGCCGTCATTTGTTTACGACTCACGCTGGACAAAAATCGAGCAGA CCAGAAAGGGCATGATGCAGGATTTTACGGTCAGCTATCACATACTGATG CCCTCCACTGCGTACACTTTTCGTGTGATTGCCTATAACCGTTACGGCAT TTCGTTTCCCGTGTACTCCAAGGACTCGATCCTGACACCCTCCAAACTCC ATCTGGAATATGGTTACCTGCAGCACAAGCCCTTTTATCGGCAAACCTGG TTTATGGTTTCGCTGGCGGCGACTTCGATTGTGATCATCGTGATGGTTAT TGCTGTGTTGTGTGTCAAGAGCAAGAGCTATAAATATAAACAAGAGGCAC AAAAGACTCTAGAGGAATCTATGGCCATGTCAATTGACGAGCGACAAGAG TTGGCTCTGGAGTTGTATCGCTCTCGTCACGGAGTTGGAACTGGTACCTT GAACAGTGTAGGCACTCTGCGAAGCGGTACCTTGGGGACTCTGGGCAGAA AGTCTACCAGTCGACCGCCGCCGGGTGTCCATCTCGGCAAGAGTCCGCCA CGCCCATCGCCCGCTTCGGTGGCGTATCACAGCGACGAGGAGAGCTTGAA GTGCTACGACGAAAATCCAGACGACAGCAGCGTGACCGAGAAGCCCTCGG AGGTCAGCAGCTCGGAGGCATCGCAGCATTCGGAGAGCGAAAACGAGAGC GTGCGCAGCGACCCCCACTCCTTTGTGAATCACTATGCCAACGTGAATGA CTCACTGCGACAGTCGTGGAAGAAGACCAAGCCGGTGCGAAACTACTCCA GCTACACCGATTCGGAGCCGGAGGGCAGTGCAGTGATGAGCCTCAATGGT GGCCAGATTATCGTCAATAATATGGCCAGGTCGAGGGCACCACTGCCCGG CTTCTCGTCATTCGTCTGACAATCAACTGAGTTCTAAGATCTAAGCACCA GTAGCAACGGCACCGTCATCCGCGAGACCTTCGTCTAGGCTGAGAACGAG GAGGGTCCGAAGAAGGAACCCGGAGCTGGGGGGTTGGCTGGGGCCACTCG AACCCGTTGGAGGACGACACACACACCCACATATCAGACAGGCCCTCCTG CCCTCAGCCCCTCCACCTTCACGACGATACGCTGCTACAGGGATATACAT ATTACTTAATACCAGACATTCAGTAAGATTATCTTGTATGCATTTAGTTT GAGTTCTTAATTATGTGCTTTTTACGTTGGGTTGTGCACTTCCGCGTCTT AACGTTATCCTTTTAACTAAAAATGTTTGTATGCCCAGTACTTCCCATAC TCGTAAAACGTATAAATTTGACCAACAGGCATTAATTGAAGTAATATTTT TAAATATGCATAACCTAGTGTAAGGAGCACATTATTTTCAGCGTCAGTTT CCCAGCATGACTCTGCTCCTATTTTATAGTATTTATTTTTGGATGTACAG TGTGAGTGCGATGCTGCCTGCCACGCCTCCAGATGTGGCATTTATGGAAT AGGGCGCGACAAATCGAATCCGAATCCTGTGATAAAACGATTTCCTTGTG CCCTAATAAGTTTTTCCAATGATTTCCAAGTGTGTTCAGCGCGTGGCAGG TAGTCTGGTCTTTTAAGTGACTGTGAGTGTGAGTGACGTACGCGCTTCGT CTGCGCAATCTCATTATATATAAAATGACAAAAGGTTATGTTTTATGTTT AGTTTTTTGTGCGAGTAAATCTAGAAAATCTACAAGTACGAAGACAAGGA CAAAACACCGATGCAATCGGTGGCCTAATAAGAAATGAAGAAAACGAGTT CATGAAACACGCGAAAGAAATCATACGCAGTAAACGAAAGTCTTTCTCTT ATAAGAAAGGATAAGTGTATTTTTTTGGAAAGGCATCGAAGAAAGGCTAT AGCCATGAGCATGAGAAGAATATCTAAGAAAGATGGCTTAGGTAATATTG ATAGGCCATATTATTGCAATTTCCCTACCACATAAGTTCACAAACGCAAG CAAAAGTAACACAAAGCAAACAAACAAACAAACGAGCAAACATGCAAGCA TTCAAAAGCTGCATAGCACACAAACAATCGAAGAATCGATTCGTTCAGAG CGCATGCGTAGCAGATTTAGCATTAAGTACGATCTTCTAGAGGTAAGATG CATTTTTTTTTTGTTAGTTGGGGGCCAGTCTCTACGGGGAGACTTTGCCC TGATACTCTAGATCGTAATTTTCGATTGTTTAATCCCCGAAGCTTAGAGA TAATTGTACTCGTGTTTGTATTTGAATGCGGTTTATATTTATGACTATAT TTATATATCGATGTATACATGTATATCTAAAAACTTAAACGACTGATTAT ATATTTTCCCCTGATTAGTTGTATACTTAACTCCTTTTTTGTAATACCTA TGCATTAACTATGCTAAGACCACTTTGGCACTTTGGCGACCGTTGAAATG AAAACGGAGTGGATAACTTTCTGCGTTTTCCCCAAATCGCAAGCTAATTT CAACTTCAAAGACTCAAAGCACAAGTTCATCTAGTTAAGTAAATGTATTT GTAATTGTTGAATTGATGATTAAAGGATAGTTCTCCACTAATTGAGGAGG CACGTTTGATGTGGAGGAACTATGGAGATGAAAAAGGTGGAGCTTAGGGA TCTTCGCTCGTTGCTAGTTGAAATTCGTGCAACAAGCGCAAAGTATTAAA ATATTGATAAATACAATTTAAATGTGTAAATGTAATTGATCGAGCATCCG AATATGAATCAATAAAAGAACATGAAATCAATGG
Other Products of this Gene
Other Transcripts
	Name FlyBase ID Length (nt) sdk-RA FBtr0070133 8843 sdk-RB FBtr0070132 8908 sdk-RD FBtr0070130 8960 sdk-RE FBtr0302259 9406 sdk-RF FBtr0302260 8774 sdk-RG FBtr0340195 9031 sdk-RH FBtr0340196 8896 sdk-RI FBtr0340197 8740
Polypeptides
Derived from THIS transcript	Name FlyBase ID Length (aa) sdk-PC FBpp0070126 2232
Derived from OTHER transcripts	Name FlyBase ID Length (aa) sdk-PA FBpp0070128 2224 sdk-PB FBpp0070127 2224 sdk-PD FBpp0070125 2224 sdk-PE FBpp0291468 2224 sdk-PF FBpp0291469 2224 sdk-PG FBpp0309170 2265 sdk-PH FBpp0309171 2220 sdk-PI FBpp0309172 2168
Comments
	This transcript differs from other sdk transcripts in the presence of a 24 bp mini exon. One cDNA with this mini exon was recovered in FBrf0098319, but it is not clear which 5' exon it is associated with. The curator has shown the longest known 5' exon as the first exon of this mRNA. Transcript terminates at site supported by polyadenylated cDNA.
External Crossreferences
	RefSeq - An integrated, non-redundant set of sequences • NM_057942
Synonyms
	CG5227-RB CG5227-RC sdk-RC
References ( 3 )
Research paper	Nguyen et al., 1997, Development 124(17): 3303--3312 The sidekick gene, a member of the immunoglobulin superfamily, is required for pattern formation in the Drosophila eye. [FBrf0098319]
FlyBase analysis	FlyBase Genome Annotators, 2004, Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. [FBrf0166453] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]