Transcript Dmel\Pax-RA

General Information
Symbol	Dmel\Pax-RA	Species	D. melanogaster
Annotation Symbol	CG31794-RA	FlyBase ID	FBtr0081213
Feature type	mRNA	Associated gene	Dmel\Pax

Evidence Rank	Strongly Supported	Length (nt)	2235
Evidence Score	11

Map ( GBrowse )
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
cDNA Clones Consistent with the Transcript ( 21 )
cDNA Clones, Fully Sequenced
Exact Match
Contained within the annotated transcript, internally consistent
End(s) extend beyond the annotated transcript, internally consistent	LD06038
cDNA Clones, End Sequence Only (ESTs)
Contained within the annotated transcript, internally consistent	41563 106180 214285.26 523065 CK01.17B.E6 CK00121 EK173434 EK231262 EK244250 EK261535 EK267404 EN03337 EN09656 EN10014 EP13153 GM22723 LD05166 LD16533 RH15253 UUGC0744
End(s) extend beyond the annotated transcript, internally consistent	LD05166
Sequence
	GTTCAGTTGATTTTAAGATTTTGCCGAGCGAAAATATTTTGTGTGCTGCT GCTGCTGCTGCGCCTCTGGTCCAGACAAACCGACAATTTTGCATATCGGC ATACGAGTGACAATCAAGCAATACATTTCGATTCCATCGATTCTGGCCAA ATTTAGTGCGTGAAATGTCTTCAAAACTGATATCATCGTCGTTCCACAGT TCGCCCCTCAGCGACTGTTTCAAAGTGGGCGAGTTCGAGCGACGTCTGGA TGCTCTATTAGCCGACCTGCAAAACAGTGTGCCAGGCCAGCCGCAGCAAC CTCAGCCGCAATATGGAACTGTCCAGCCCAAACATCAAGCTCTGCAGCAA CAGCAGTTTGTGGACAACACTCCAGGTTATGGAAGTCTCAGGGGCAAAGC CCAGCCCCAGGTGTATCAAGAGCACTACAGCGTAGAGACACGCTCCCCAA CGGCTGGACATGATTTTAATGGCTCCTCAACGACTCCGGGATACGCTAAC CAGGGATCGTTGCCACGTCAGGCGGCGGGTGCAAGCACAGGACTCTCAGA ACTGGACTCCTTGCTGCAGGATCTGCAGAAAATCGATGTACCGGTCAACT ACAGTACTCCAGTCTCGAAATACAATACGATGAATAGTTATGCCACCGTG GAGGAGCGTCCTTCAGTGGACAGCCTGCTGAAAGAACTGGACAATGCTCA CATCTATGCTGTTCCTAACGGATCTGCGCATAAATCTCCGACGCCGGGAC GACATGTCACCATCACCGTTCGGGAAACGAAGACGGAGAAGTTGACGGGT CCGGATGGACCAGTTGGCACTGTCGAGGAGCAAATTGTGCAGCAGAAGGA TTCTTATACGCCCAATCATGCTGTTCCGGGACAACAGGTGCATCAGGCCT ATACGTCGCAGGCCACCAAGGAACTGGATGATCTGATGGCTTCACTTTCC GACTTCAAGGTTAGCAACGGAACAAACGGCATCGGAAACGGCAGTCATCC GCAACAGCACTCGTCGACAGTGCAGCACCAGACGGTAACCGACTACGCCA GACCAAACAAGGGTAGCCAGCAGGCACATCTCACCCAGACGATCGAGGAG ACGACCATCGTCGAGGACAGTCGCGAGGATCAGTTGGATTCTATGCTAGG CAATCTACAGGCCAATATGAGTCGCCAAGGAGTCAATACCGTGCAGAAGG GCTGCTGCAATGCCTGCGAGAAGCCCATTGTGGGCCAGGTGATCACAGCC CTGGGCAAGACATGGCATCCGGAGCACTTCACGTGCAACCACTGCAGCCA GGAGTTGGGCACCCGCAATTTCTTCGAGCGCGACGGCTTCCCGTACTGCG AGCCGGACTACCACAATCTGTTCAGCCCGCGCTGCGCCTACTGCAACGGC GCCATTCTGGACAAGTGCGTAACGGCGCTGGACAAGACCTGGCACACGGA GCACTTCTTCTGCGCCCAGTGCGGCCAGCAGTTCGGCGAGGAGGGATTCC ATGAGCGTGACGGCAAGCCGTACTGTCGCAACGACTACTTCGAGATGTTT GCCCCGAAGTGCAATGGCTGCAACCGCGCCATTATGGAGAACTACATCTC GGCGCTGAACTCGCAGTGGCATCCGGATTGCTTCGTCTGCAGGGACTGCC GACAGCCCTTCCAAGGAGGATCCTTCTTTGATCACGAGGGACTGCCGTAC TGCGAGACGCACTACCATGCCAAGCGAGGATCCCTGTGCGCCGGGTGTTC CAAACCCATCACCGGACGCTGCATCACGGCCATGTTCAAGAAATTCCACC CGGAACACTTCGTCTGCGCCTTCTGCCTGAAGCAGTTGAATAAGGGCACT TTCAAGGAGCAAAAGGACAAGCCATACTGCCACACCTGCTTCGACAAGAT ATTCGGATGAAGATATTCGCAGCTGCCAAACTCTAGTTATGCATATAATA CTGTTTTTTATACGATTTACGACCCAATCCCACACGCACCAGCCCCACTC AACCACCCCCCCCCCCCACACACCTGTACACCTACTTACCGTGCATCTGT GCTTTGTATAACCGAGTCAATTTAGTAATTTAATTAACGCCATCCGAGCA GGATACGATAATAGAATGCGATCGTAATCAATTAGCAGACACTAATCCTA ATCAATAATGTTGGTCACTTTGATATTGCTACTCGTTCGACATGAAAAGA CCATAGAACCGAATGATAAATAAATAAGAGAAACC
Other Products of this Gene
Other Transcripts
	Name FlyBase ID Length (nt) Pax-RB FBtr0081212 2043 Pax-RC FBtr0081210 2377 Pax-RD FBtr0081214 1380 Pax-RF FBtr0081211 2447 Pax-RG FBtr0100449 2583 Pax-RH FBtr0306598 2097 Pax-RJ FBtr0334166 2253 Pax-RK FBtr0334167 2227
Polypeptides
Derived from THIS transcript	Name FlyBase ID Length (aa) Pax-PA FBpp0080754 581
Derived from OTHER transcripts	Name FlyBase ID Length (aa) Pax-PB FBpp0080753 556 Pax-PC FBpp0080751 557 Pax-PD FBpp0080755 197 Pax-PF FBpp0080752 581 Pax-PG FBpp0099871 581 Pax-PH FBpp0297553 563 Pax-PJ FBpp0306283 581 Pax-PK FBpp0306284 581
Comments
	Transcript terminates at site supported by polyadenylated cDNA.
External Crossreferences
	RefSeq - An integrated, non-redundant set of sequences • NM_078877
Synonyms
	CG31794-RA Pax-RA
References ( 3 )
FlyBase analysis	FlyBase Genome Annotators, 2005, Changes affecting gene model number or type in release 4.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 4.2 of the annotated D.melanogaster genome. [FBrf0182792] FlyBase Genome Annotators, 2004, Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. [FBrf0166453] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]