Transcript Dmel\cnc-RC

General Information
Symbol	Dmel\cnc-RC	Species	D. melanogaster
Annotation Symbol	CG17894-RC	FlyBase ID	FBtr0084392
Feature type	mRNA	Associated gene	Dmel\cnc
Created / Updated	2001-02-12/2004-06-05

Evidence Rank	Weakly Supported	Length (nt)	6703
Evidence Score	3

Map ( GBrowse )
cDNA Clones Consistent with the Transcript ( 33 )
cDNA Clones, Fully Sequenced
Exact Match
Contained within the annotated transcript, internally consistent
End(s) extend beyond the annotated transcript, internally consistent
cDNA Clones, End Sequence Only (ESTs)
Contained within the annotated transcript, internally consistent	EK169038 bs68f09 EK273433 EK142607 EP18931 LP16195 EK211147 EK048153 EK028129 LP07130 SD04321 EK235916 EK104545 LP03307 GH18478 EK214412 EK055355 LP24116 LP03485 bs05g02 EK256946 EK065441 EK161046 EP16018 bs86b02 EK044423 EK029945 EK152229
End(s) extend beyond the annotated transcript, internally consistent	IP02829 ESG0113d.B21_D12 ESG015b.E21_B06 IP03129 ESG015a.E21_B06
Sequence
	AGACGTTTTTTGCCTCAAATGTTTTGAGGCCGCAATCGAAAATCGCGACT GATTTCGACGGCGGAGAAATTGCCAAACGCGGCGTAACAAACAAAACACG TTTTCAAGCTCACCACCAATTAAAAGTAAAAATCGTAGAAAGTGAAACAT AAACAAATAAGGTCTTGCAGAGCAAAAGAAAAGTGAACGGTAAACAATAA ACCATTGTGTGTGCTGCAGGGAAGAAGAAGCAGCGAAGAGGAAAAGAAGA TCAAGCAACGGCAACAACAACAAGGAGAACATTTACTGCGCCGCAGCTTT TTTACCGTTGTAGTCGGGTCTCATCATCCAAAAAAAATTTGAGAACAAAA CCGAGGACAGCCATCAATTAAAAGCAAAGAGCATTGGAAAATCGGGGAGA TAGGCCGTGGAAACTGCGAATTTTCAGCTTTTTGCGCAGATTTCGGAACG CCGAAGGAGGAGGAGGAGGAGGAGGCCGGAAGGCGGGGCAAGGCGACGTC ATTGAACGCATAGATCCCGGACGACGCAGCCGTAGAGCTGTTGTCCGGGA CGGAGAACAACAAGAACAACAGCAGCGGAGGAGGAGGAGGAGGAGGAGGA GGCGGCGGGCGGAGGTGGACTACGGACTACAAGAGTCACCCACGCACCCA TTCGCTCACGTATCGAAACCTCTGAAAGCAACAAAATGATCTCAAACAAA AAATCGTACGCTATGAAAATGCTGCAGCTGGCTTTGGCCTTGAGTCTGCT GCATTATAATCCCGATTACCTGCTCCATCGCTGGGACTCGCAGCTGGAAT TGGGCACCCATGGCGATGGATGGGAGCTGGAGATGCTGCGGACGGTACAC CGCCTGGATATGGATCACAACCCGTATGGAAATCGTAAAGGACTGAGTCC CCGCATTGAGGATCTCCTAAACTTCGACGATCCTTCCTTGGGGGGAATGG CCAATGGCATAGGGGGCTGCAAGCTTCCGCCAAGATTCAACGGCAGCACT TTTGTAATGAATCTCCACAACACCACCGGGAATAGCAGTGTCCAGACGGC AGCTCTGCAGGATGTGCAGAGCACTAGTGCTGCCGCCACTGGCGGTACAA TGGTGGTTGGTACTGGTGGTGCACCCACCTCGGGTGGTCAAACCAGTGGT TCTGCACTGGGTGAAATCCACATTGATACCGCCTCGCTGGACCCTGGAAA TGCCAACCATTCGCCGCTGCATCCAACATCAGAATTGGACACTTTCCTCA CGCCACATGCGCTGCAGGATCAGCGTTCCATTTGGGAACAGAATCTAGCG GATCTCTATGACTACAATGATTTGAGTCTGCAAACCAGTCCCTATGCAAA TCTGCCTCTTAAGGATGGCCAGCCTCAGCCATCAAACAGTTCGCATCTGG ATCTCAGCTTGGCGGCGCTTCTACATGGTTTCACCGGCGGCAGTGGAGCA CCCCTCAGCACCGCCGCCCTCAATGATAGCACTCCACATCCCAGGAATCT GGGTAGTGTCACAAATAACTCGGCTGGAAGGAGCGATGATGGCGAGGAGA GTCTCTATTTGGGTCGACTGTTCGGAGAGGACGAGGATGAAGATTACGAG GGCGAGCTGATCGGTGGAGTGGCCAACGCCTGCGAGGTGGAGGGTCTGAC CACCGATGAGCCCTTTGGCAGTAACTGCTTCGCCAACGAGGTGGAAATCG GAGATGACGAGGAGGAGAGTGAGATCGCTGAGGTGCTCTACAAGCAGGAT GTGGATTTGGGCTTCAGTTTGGACCAGGAGGCGATCATCAATGCCTCCTA TGCCAGCGGCAATAGTGCGGCTACCAATGTCAAGTCGAAGCCGGAGGATG AGACCAAGTCCTCGGATCCATCGATTTCGGAATCCAGCGGCTTCAAGGAC ACCGATGTGAATGCCGAGAACGAGGCCAGTGCCGCCTCTGTCGACGATAT TGAGAAGTTGAAAGCTCTGGAGGAGCTTCAACAAGATAAGGACAAGAACA ATGAGAATCAACTGGAGGACATTACCAATGAATGGAACGGAATACCCTTT ACCATCGATAACGAAACTGGTGAATACATACGCTTGCCCCTGGATGAGTT GTTGAACGACGTACTCAAACTTTCTGAATTTCCGCTTCAAGACGATTTAT CCAACGATCCGGTGGCCTCCACTTCGCAGGCAGCTGCCGCTTTTAACGAG AACCAAGCTCAACGGATTGTTTCGGAAACCGGTGAGGATTTACTCAGTGG CGAAGGAATTTCCAGCAAGCAAAATAGAAACGAAGCGAAGAATAAGGACA ACGATCCGGAGAAAGCTGACGGCGATAGCTTCTCGGTGAGCGATTTCGAG GAACTTCAAAATTCTGTGGGCTCGCCCCTGTTTGACTTAGATGAGGACGC CAAGAAGGAACTAGACGAGATGTTGCAATCAGCGGTTCCGTCATACCACC ATCCCCATCCGCATCACGGCCACCCTCATGCTCATCCCCATAGCCACCAC CATGCGTCGATGCACCATGCCCATGCCCACCATGCTGCCGCTGCAGCTGC CGCCCACCAGCGTGCGGTGCAGCAGGCCAACTATGGTGGTGGAGTCGGCG TGGGCGTTGGCGTCGGTGTGGGCGTGGGCAGTGGCACGGGCAGCGCCTTC CAGAGGCAGCCAGCTGCCGGCGGATTCCATCATGGCCATCATCAGGGCCG CATGCCGCGTCTGAATCGCAGCGTTTCGATGGAGCGTCTTCAGGACTTTG CCACCTACTTCAGTCCCATTCCGAGCATGGTGGGCGGGGTATCCGATATG TCACCGTATCCGCATCACTATCCCGGCTACTCCTATCAGGCGAGTCCCTC GAACGGAGCACCCGGCACTCCTGGCCAGCATGGTCAGTATGGCAGTGGCG CCAATGCTACATTGCAGCCACCACCACCACCGCCGCCGCCGCATCACGCT GCCATGTTGCATCACCCGAATGCCGCCTTGGGCGACATCTGCCCCACCGG GCAGCCCCACTACGGGCACAATCTGGGATCGGCTGTCACCTCCAGCATGC ATCTGACCAACTCCAGTCACGAGGCCGATGGAGCCGCCGCTGCTGCTGCC GCCTACAAAGTGGAGCACGATTTAATGTACTACGGGAACACCTCATCGGA CATTAACCAGACGGATGGCTTTATTAACTCCATTTTTACCGACGAGGATC TGCACTTGATGGACATGAATGAGAGCTTCTGTCGCATGGTTGACAACAGC ACTAGCAACAACTCCTCGGTTCTGGGCTTGCCCAGCAGTGGACATGTTAG CAACGGCTCCGGTAGCTCGGCACAACTTGGGGCGGGAAATCCGCACGGTA ACCAGGCCAACGGAGCGTCCGGCGGCGTTGGCTCAATGAGCGGATCAGCT GTGGGCGCTGGAGCTACGGGAATGACCGCCGATCTCTTGGCAAGCGGCGG TGCAGGAGCACAAGGCGGTGCGGATCGCTTGGACGCGTCCAGCGACAGTG CTGTCAGTTCGATGGGCTCCGAGCGAGTGCCGTCCCTCTCCGACGGCGAG TGGGGTGAGGGCAGTGACTCCGCCCAGGATTACCATCAGGGCAAGTACGG AGGCCCCTACGACTTCAGCTACAACAATAATTCACGGCTTAGCACCGCCA CACGTCAGCCGCCGGTGGCGCAGAAGAAGCATCAGCTGTACGGCAAGAGG GATCCCCATAAGCAGACGCCATCGGCTTTGCCACCAACAGCTCCACCAGC AGCCGCGACTGCAGTCCAATCGCAGAGTATCAAGTACGAGTACGATGCTG GGTACGCCTCCTCGGGAATGGCCAGCGGTGGAATCAGTGAGCCAGGAGCG ATGGGACCCGCTCTATCCAAGGACTATCATCATCATCAGCCTTACGGCAT GGGAGCCAGCGGCAGCGCCTTTTCCGGCGACTATACAGTACGACCATCGC CAAGGACTTCGCAGGATTTGGTGCAACTAAATCATACCTACTCGCTACCC CAGGGAAGTGGATCCCTTCCCAGACCCCAGGCACGCGATAAGAAGCCCCT GGTCGCCACTAAAACCGCATCGAAGGGAGCGAGTGCCGGCAACAGCAGCA GTGTTGGCGGAAACAGCAGCAACTTGGAGGAAGAGCATCTGACACGCGAT GAAAAGCGCGCTCGATCCCTGAACATACCCATTTCAGTGCCGGACATCAT TAACCTGCCCATGGACGAGTTCAACGAGCGCTTGTCGAAGTACGACCTTA GCGAGAACCAGTTGTCGCTGATTCGCGACATTCGTCGGCGTGGAAAGAAC AAGGTCGCTGCCCAGAATTGCAGGAAACGCAAATTGGACCAGATCCTGAC TCTAGAGGATGAGGTGAACGCGGTGGTTAAGCGCAAGACCCAACTTAATC AGGACCGCGATCATTTGGAGAGCGAACGCAAGCGCATCTCGAACAAGTTT GCCATGCTGCATCGTCATGTCTTCCAGTACCTACGGGATCCCGAGGGAAA TCCCTGCTCGCCGGCGGACTACAGTTTGCAACAGGCTGCCGATGGCTCCG TCTACTTGCTACCACGTGAAAAGTCCGAGGGTAACAACACGGCTACAGCT GCCTCCAATGCTGTTTCGTCGGCCAGTGGGGGAAGTCTTAATGGCCACGT GCCCACTCAGGCTCCCATGCACAGCCATCAGAGCCACGGAATGCAGGCGC AACATGTTGTCGGTGGGATGTCGCAGCAGCAGCAACAGCAGTCGAGGCTG CCTCCACACCTGCAACAGCAGCATCATCTGCAGTCGCAGCAACAGCAGCC GGGAGGTCAGCAGCAACAGCAGCACCGCAAGGAATGAAAGTACCTGTTGC GAATTGCCGCAACTAAGAGTTGGTTCACTAGTTTCCAGCGCGGGCAGCAG CATCGATCCGTGCAGCAGCAACAGCAACAGTTTGATTACCGCTACGATAT GATGAACAACAGTTATCTGTACTACTGAGCGGCGATTTGGATATTCTACT TCTTGTTTTAGATGCCACATGTTGCTGGCAACATTTGTTGCACCCGCTGC TTTCGGCCCATTGGAGCTCTTTCATTTATCGCACCAATCCTCCCATTAAT GGTTTACTCATTTAGTCAGCATGATTGTTATTTATTTTTTAATTAATTGA TTATTTGGACTCGTCCAAGTCCGTCTTGCATGGTGTTGTCCCTTCTGGAC AGCGTATGCGAAGCCTTTTACTTAATTGCAATTAATGAAAAACAAAACTT GTGATAAAACAGCTCTTTTACTCCGAAATATTTGCGCCCCAAAGGTCAAG CTGACAGAAAAATGTGCGAAAACAAACAGATCCGAAAAGAATGTAATTAA AAATGCTTCACATGAATTTGTAAATCAGTAAACAACTCACATTCAGAACC AATCCCACTTATCCATTATTCATCGTCGCGTCGTCCAACAATATTTGATG GTGAAACCGTTTACATCTCTATAATATTAGCTTGTAAAATATGAAAACAC AAAGATGGATGCAGAGAAAAATGTATAAAATAGACGATAGGAAAATACAC ACACACACAAAACTATTGTAAAGGTTGAAAATATTGCTGGACATTTCATG AATTACGGGCGTAAGACATTTACATTTGTAAGCTATATTCTAGTGAAAGA TCTACCACAGCGGTGAATAGTTGTAAATCGTTCTAAACTCATAAGGCATT TATCAAAATCCCATACACAAAAAATAACACAAATTATCACTTTCGAGCTA GCACACAGCATCTGTAAATACATAATTTAAACTTAGCTAACATTTAATAA ACCAGCGCTAGGCTAAAGCAACAATGAGTGTGCTAACACACCTCAAAGAA ACTAAAGAAAATACTAAACAAAAAAAAAAAAAAAAAGGGAAAGAATCGAA AAATTTTAAACAAAAATAATTGCTCTTGCTAGAGCGTCCCGTTAACTGTC TTTAAAACGGTTTAGTAGATAAGCGATTAAGAAATATTAATATTTAATAT TCTTAAAAATGTCCTACAGCATAAAGAGTTAAACTTTAAACTAAGCCACA GCTACAGATACGATATCAACCTAAGCAAATCCGATACGAAAACAAAACAT GGATCTATTGTTAATATAGGCATATGTATTTTAATTGTTGTAATGAATTT CGCGCACATTTGAAAGTCGATTGTTGCAAGTCGAAATCGAAAACTACGAA ATTCAATAAAAAGCGCAACTTTAATAAAAAGATTATTTGTTGTAAATTGA AATTGAACTAATTACCTACTATTGTACTACTACGCCTACGGACATAAAAA ATACATTAAAAGAAACCCTTCGCGTATTCTATTAACATAAAATTTGGTAA GAGGAGTGTTTAGATACCAAGAATATCCTTGATATGCTATCAAAAGCTTC CAAGGATCTCTGACCACCTTTGACCAATCCCTGTACTTGTATGTCGCTAT ATATTTGTGTATGTTTCATATGAGAAATTTGTATGCTTTAAAAATGATAA ACTTTCCCTCAGCTAAACAAAGAACGTCAAAATTAAAGAAAAAAACACTA CAAAAATATATAAAACTGTCTTTCATTGGATTCATATTATGCACTACCCG GGAGTATTCCAAATAAAACGCATCGGTTAGATTCTTTTCATTCCATTTTA TGGTATAATTCACCGTCTTTCATTTGCACAATCTGGGCGAAGCTTAAAAA TAA
Other Products of this Gene
Other Transcripts
	Name FlyBase ID Length (nt) cnc-RA FBtr0084398 3479 cnc-RB FBtr0084393 5132 cnc-RD FBtr0084397 3572 cnc-RE FBtr0084396 3552 cnc-RF FBtr0084395 3577 cnc-RG FBtr0084394 3794
Polypeptides
Derived from THIS transcript	Name FlyBase ID Length (aa) cnc-PC FBpp0083784 1383
Derived from OTHER transcripts	Name FlyBase ID Length (aa) cnc-PA FBpp0083790 533 cnc-PB FBpp0083785 805 cnc-PD FBpp0083789 533 cnc-PE FBpp0083788 533 cnc-PF FBpp0083787 533 cnc-PG FBpp0083786 533
External Crossreferences
	RefSeq - An integrated, non-redundant set of sequences • NM_170053
Synonyms
	CG17894-RC cnc-RC
References ( 3 )
Research paper	McGinnis et al., 1998, Development 125(22): 4553--4564 A cap 'n' collar protein isoform contains a selective Hox repressor function. [FBrf0105883]
FlyBase analysis	FlyBase Genome Annotators, 2004, Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. [FBrf0166453] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]