Transcript Dmel\cnc-RE

General Information
Symbol	Dmel\cnc-RE	Species	D. melanogaster
Annotation Symbol	CG17894-RE	FlyBase ID	FBtr0084396
Feature type	mRNA	Associated gene	Dmel\cnc
Created / Updated	2004-06-05/2004-06-05

Evidence Rank	Weakly Supported	Length (nt)	3552
Evidence Score	3

Map ( GBrowse )
cDNA Clones Consistent with the Transcript ( 31 )
cDNA Clones, Fully Sequenced
Exact Match
Contained within the annotated transcript, internally consistent
End(s) extend beyond the annotated transcript, internally consistent
cDNA Clones, End Sequence Only (ESTs)
Contained within the annotated transcript, internally consistent	EK169038 bs68f09 EK273433 EK142607 EP18931 EK211147 EK048153 EK028129 LP07130 EK235916 EK104545 LP03307 GH18478 GM30690 EK214412 EK055355 LP24116 LP03485 bs05g02 EK256946 EK065441 EK161046 bs86b02 EK044423 EK029945 EK152229
End(s) extend beyond the annotated transcript, internally consistent	IP02829 ESG0113d.B21_D12 ESG015b.E21_B06 IP03129 ESG015a.E21_B06
Sequence
	AATATCTTGACGCGGAATTCCACAGGAGTTGCTGTGGAGTTCACGTTCTT GAGATCGGCATTCAAATTATAACGCTTCTGTCGCATGGTTGACAACAGCA CTAGCAACAACTCCTCGGTTCTGGGCTTGCCCAGCAGTGGACATGTTAGC AACGGCTCCGGTAGCTCGGCACAACTTGGGGCGGGAAATCCGCACGGTAA CCAGGCCAACGGAGCGTCCGGCGGCGTTGGCTCAATGAGCGGATCAGCTG TGGGCGCTGGAGCTACGGGAATGACCGCCGATCTCTTGGCAAGCGGCGGT GCAGGAGCACAAGGCGGTGCGGATCGCTTGGACGCGTCCAGCGACAGTGC TGTCAGTTCGATGGGCTCCGAGCGAGTGCCGTCCCTCTCCGACGGCGAGT GGGGTGAGGGCAGTGACTCCGCCCAGGATTACCATCAGGGCAAGTACGGA GGCCCCTACGACTTCAGCTACAACAATAATTCACGGCTTAGCACCGCCAC ACGTCAGCCGCCGGTGGCGCAGAAGAAGCATCAGCTGTACGGCAAGAGGG ATCCCCATAAGCAGACGCCATCGGCTTTGCCACCAACAGCTCCACCAGCA GCCGCGACTGCAGTCCAATCGCAGAGTATCAAGTACGAGTACGATGCTGG GTACGCCTCCTCGGGAATGGCCAGCGGTGGAATCAGTGAGCCAGGAGCGA TGGGACCCGCTCTATCCAAGGACTATCATCATCATCAGCCTTACGGCATG GGAGCCAGCGGCAGCGCCTTTTCCGGCGACTATACAGTACGACCATCGCC AAGGACTTCGCAGGATTTGGTGCAACTAAATCATACCTACTCGCTACCCC AGGGAAGTGGATCCCTTCCCAGACCCCAGGCACGCGATAAGAAGCCCCTG GTCGCCACTAAAACCGCATCGAAGGGAGCGAGTGCCGGCAACAGCAGCAG TGTTGGCGGAAACAGCAGCAACTTGGAGGAAGAGCATCTGACACGCGATG AAAAGCGCGCTCGATCCCTGAACATACCCATTTCAGTGCCGGACATCATT AACCTGCCCATGGACGAGTTCAACGAGCGCTTGTCGAAGTACGACCTTAG CGAGAACCAGTTGTCGCTGATTCGCGACATTCGTCGGCGTGGAAAGAACA AGGTCGCTGCCCAGAATTGCAGGAAACGCAAATTGGACCAGATCCTGACT CTAGAGGATGAGGTGAACGCGGTGGTTAAGCGCAAGACCCAACTTAATCA GGACCGCGATCATTTGGAGAGCGAACGCAAGCGCATCTCGAACAAGTTTG CCATGCTGCATCGTCATGTCTTCCAGTACCTACGGGATCCCGAGGGAAAT CCCTGCTCGCCGGCGGACTACAGTTTGCAACAGGCTGCCGATGGCTCCGT CTACTTGCTACCACGTGAAAAGTCCGAGGGTAACAACACGGCTACAGCTG CCTCCAATGCTGTTTCGTCGGCCAGTGGGGGAAGTCTTAATGGCCACGTG CCCACTCAGGCTCCCATGCACAGCCATCAGAGCCACGGAATGCAGGCGCA ACATGTTGTCGGTGGGATGTCGCAGCAGCAGCAACAGCAGTCGAGGCTGC CTCCACACCTGCAACAGCAGCATCATCTGCAGTCGCAGCAACAGCAGCCG GGAGGTCAGCAGCAACAGCAGCACCGCAAGGAATGAAAGTACCTGTTGCG AATTGCCGCAACTAAGAGTTGGTTCACTAGTTTCCAGCGCGGGCAGCAGC ATCGATCCGTGCAGCAGCAACAGCAACAGTTTGATTACCGCTACGATATG ATGAACAACAGTTATCTGTACTACTGAGCGGCGATTTGGATATTCTACTT CTTGTTTTAGATGCCACATGTTGCTGGCAACATTTGTTGCACCCGCTGCT TTCGGCCCATTGGAGCTCTTTCATTTATCGCACCAATCCTCCCATTAATG GTTTACTCATTTAGTCAGCATGATTGTTATTTATTTTTTAATTAATTGAT TATTTGGACTCGTCCAAGTCCGTCTTGCATGGTGTTGTCCCTTCTGGACA GCGTATGCGAAGCCTTTTACTTAATTGCAATTAATGAAAAACAAAACTTG TGATAAAACAGCTCTTTTACTCCGAAATATTTGCGCCCCAAAGGTCAAGC TGACAGAAAAATGTGCGAAAACAAACAGATCCGAAAAGAATGTAATTAAA AATGCTTCACATGAATTTGTAAATCAGTAAACAACTCACATTCAGAACCA ATCCCACTTATCCATTATTCATCGTCGCGTCGTCCAACAATATTTGATGG TGAAACCGTTTACATCTCTATAATATTAGCTTGTAAAATATGAAAACACA AAGATGGATGCAGAGAAAAATGTATAAAATAGACGATAGGAAAATACACA CACACACAAAACTATTGTAAAGGTTGAAAATATTGCTGGACATTTCATGA ATTACGGGCGTAAGACATTTACATTTGTAAGCTATATTCTAGTGAAAGAT CTACCACAGCGGTGAATAGTTGTAAATCGTTCTAAACTCATAAGGCATTT ATCAAAATCCCATACACAAAAAATAACACAAATTATCACTTTCGAGCTAG CACACAGCATCTGTAAATACATAATTTAAACTTAGCTAACATTTAATAAA CCAGCGCTAGGCTAAAGCAACAATGAGTGTGCTAACACACCTCAAAGAAA CTAAAGAAAATACTAAACAAAAAAAAAAAAAAAAAGGGAAAGAATCGAAA AATTTTAAACAAAAATAATTGCTCTTGCTAGAGCGTCCCGTTAACTGTCT TTAAAACGGTTTAGTAGATAAGCGATTAAGAAATATTAATATTTAATATT CTTAAAAATGTCCTACAGCATAAAGAGTTAAACTTTAAACTAAGCCACAG CTACAGATACGATATCAACCTAAGCAAATCCGATACGAAAACAAAACATG GATCTATTGTTAATATAGGCATATGTATTTTAATTGTTGTAATGAATTTC GCGCACATTTGAAAGTCGATTGTTGCAAGTCGAAATCGAAAACTACGAAA TTCAATAAAAAGCGCAACTTTAATAAAAAGATTATTTGTTGTAAATTGAA ATTGAACTAATTACCTACTATTGTACTACTACGCCTACGGACATAAAAAA TACATTAAAAGAAACCCTTCGCGTATTCTATTAACATAAAATTTGGTAAG AGGAGTGTTTAGATACCAAGAATATCCTTGATATGCTATCAAAAGCTTCC AAGGATCTCTGACCACCTTTGACCAATCCCTGTACTTGTATGTCGCTATA TATTTGTGTATGTTTCATATGAGAAATTTGTATGCTTTAAAAATGATAAA CTTTCCCTCAGCTAAACAAAGAACGTCAAAATTAAAGAAAAAAACACTAC AAAAATATATAAAACTGTCTTTCATTGGATTCATATTATGCACTACCCGG GAGTATTCCAAATAAAACGCATCGGTTAGATTCTTTTCATTCCATTTTAT GGTATAATTCACCGTCTTTCATTTGCACAATCTGGGCGAAGCTTAAAAAT AA
Other Products of this Gene
Other Transcripts
	Name FlyBase ID Length (nt) cnc-RA FBtr0084398 3479 cnc-RB FBtr0084393 5132 cnc-RC FBtr0084392 6703 cnc-RD FBtr0084397 3572 cnc-RF FBtr0084395 3577 cnc-RG FBtr0084394 3794
Polypeptides
Derived from THIS transcript	Name FlyBase ID Length (aa) cnc-PE FBpp0083788 533
Derived from OTHER transcripts	Name FlyBase ID Length (aa) cnc-PA FBpp0083790 533 cnc-PB FBpp0083785 805 cnc-PC FBpp0083784 1383 cnc-PD FBpp0083789 533 cnc-PF FBpp0083787 533 cnc-PG FBpp0083786 533
Comments
	Only one EST supports this alternative transcript
External Crossreferences
	RefSeq - An integrated, non-redundant set of sequences • NM_170057
Synonyms
	CG17894-RE cnc-RE
References ( 2 )
FlyBase analysis	FlyBase Genome Annotators, 2004, Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. [FBrf0166453] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]