Transcript Dmel\cnc-RA

General Information
Symbol	Dmel\cnc-RA	Species	D. melanogaster
Annotation Symbol	CG17894-RA	FlyBase ID	FBtr0084398
Feature type	mRNA	Associated gene	Dmel\cnc
Created / Updated	1998-03-10/2004-06-05

Evidence Rank	Strongly Supported	Length (nt)	3479
Evidence Score	11

Map ( GBrowse )
cDNA Clones Consistent with the Transcript ( 40 )
cDNA Clones, Fully Sequenced
Exact Match
Contained within the annotated transcript, internally consistent
End(s) extend beyond the annotated transcript, internally consistent	LD12407
cDNA Clones, End Sequence Only (ESTs)
Contained within the annotated transcript, internally consistent	EK169038 bs68f09 EK273433 EK142607 EP18931 EK211147 EK048153 EK028129 LP07130 EK235916 EK104545 LP03307 GH18478 EK214412 EK055355 LP24116 LP03485 bs05g02 EK256946 EK065441 EK161046 bs86b02 EK044423 EK029945 EK152229
End(s) extend beyond the annotated transcript, internally consistent	IP02829 ESG0113d.B21_D12 ESG015b.E21_B06 IP03129 ESG015a.E21_B06 AT08413 GH24678 LP16195 RE06745 RE66371 RE28523 GM30690 RE68678 AT26211
Sequence
	GCTTCTGTCGCATGGTTGACAACAGCACTAGCAACAACTCCTCGGTTCTG GGCTTGCCCAGCAGTGGACATGTTAGCAACGGCTCCGGTAGCTCGGCACA ACTTGGGGCGGGAAATCCGCACGGTAACCAGGCCAACGGAGCGTCCGGCG GCGTTGGCTCAATGAGCGGATCAGCTGTGGGCGCTGGAGCTACGGGAATG ACCGCCGATCTCTTGGCAAGCGGCGGTGCAGGAGCACAAGGCGGTGCGGA TCGCTTGGACGCGTCCAGCGACAGTGCTGTCAGTTCGATGGGCTCCGAGC GAGTGCCGTCCCTCTCCGACGGCGAGTGGGGTGAGGGCAGTGACTCCGCC CAGGATTACCATCAGGGCAAGTACGGAGGCCCCTACGACTTCAGCTACAA CAATAATTCACGGCTTAGCACCGCCACACGTCAGCCGCCGGTGGCGCAGA AGAAGCATCAGCTGTACGGCAAGAGGGATCCCCATAAGCAGACGCCATCG GCTTTGCCACCAACAGCTCCACCAGCAGCCGCGACTGCAGTCCAATCGCA GAGTATCAAGTACGAGTACGATGCTGGGTACGCCTCCTCGGGAATGGCCA GCGGTGGAATCAGTGAGCCAGGAGCGATGGGACCCGCTCTATCCAAGGAC TATCATCATCATCAGCCTTACGGCATGGGAGCCAGCGGCAGCGCCTTTTC CGGCGACTATACAGTACGACCATCGCCAAGGACTTCGCAGGATTTGGTGC AACTAAATCATACCTACTCGCTACCCCAGGGAAGTGGATCCCTTCCCAGA CCCCAGGCACGCGATAAGAAGCCCCTGGTCGCCACTAAAACCGCATCGAA GGGAGCGAGTGCCGGCAACAGCAGCAGTGTTGGCGGAAACAGCAGCAACT TGGAGGAAGAGCATCTGACACGCGATGAAAAGCGCGCTCGATCCCTGAAC ATACCCATTTCAGTGCCGGACATCATTAACCTGCCCATGGACGAGTTCAA CGAGCGCTTGTCGAAGTACGACCTTAGCGAGAACCAGTTGTCGCTGATTC GCGACATTCGTCGGCGTGGAAAGAACAAGGTCGCTGCCCAGAATTGCAGG AAACGCAAATTGGACCAGATCCTGACTCTAGAGGATGAGGTGAACGCGGT GGTTAAGCGCAAGACCCAACTTAATCAGGACCGCGATCATTTGGAGAGCG AACGCAAGCGCATCTCGAACAAGTTTGCCATGCTGCATCGTCATGTCTTC CAGTACCTACGGGATCCCGAGGGAAATCCCTGCTCGCCGGCGGACTACAG TTTGCAACAGGCTGCCGATGGCTCCGTCTACTTGCTACCACGTGAAAAGT CCGAGGGTAACAACACGGCTACAGCTGCCTCCAATGCTGTTTCGTCGGCC AGTGGGGGAAGTCTTAATGGCCACGTGCCCACTCAGGCTCCCATGCACAG CCATCAGAGCCACGGAATGCAGGCGCAACATGTTGTCGGTGGGATGTCGC AGCAGCAGCAACAGCAGTCGAGGCTGCCTCCACACCTGCAACAGCAGCAT CATCTGCAGTCGCAGCAACAGCAGCCGGGAGGTCAGCAGCAACAGCAGCA CCGCAAGGAATGAAAGTACCTGTTGCGAATTGCCGCAACTAAGAGTTGGT TCACTAGTTTCCAGCGCGGGCAGCAGCATCGATCCGTGCAGCAGCAACAG CAACAGTTTGATTACCGCTACGATATGATGAACAACAGTTATCTGTACTA CTGAGCGGCGATTTGGATATTCTACTTCTTGTTTTAGATGCCACATGTTG CTGGCAACATTTGTTGCACCCGCTGCTTTCGGCCCATTGGAGCTCTTTCA TTTATCGCACCAATCCTCCCATTAATGGTTTACTCATTTAGTCAGCATGA TTGTTATTTATTTTTTAATTAATTGATTATTTGGACTCGTCCAAGTCCGT CTTGCATGGTGTTGTCCCTTCTGGACAGCGTATGCGAAGCCTTTTACTTA ATTGCAATTAATGAAAAACAAAACTTGTGATAAAACAGCTCTTTTACTCC GAAATATTTGCGCCCCAAAGGTCAAGCTGACAGAAAAATGTGCGAAAACA AACAGATCCGAAAAGAATGTAATTAAAAATGCTTCACATGAATTTGTAAA TCAGTAAACAACTCACATTCAGAACCAATCCCACTTATCCATTATTCATC GTCGCGTCGTCCAACAATATTTGATGGTGAAACCGTTTACATCTCTATAA TATTAGCTTGTAAAATATGAAAACACAAAGATGGATGCAGAGAAAAATGT ATAAAATAGACGATAGGAAAATACACACACACACAAAACTATTGTAAAGG TTGAAAATATTGCTGGACATTTCATGAATTACGGGCGTAAGACATTTACA TTTGTAAGCTATATTCTAGTGAAAGATCTACCACAGCGGTGAATAGTTGT AAATCGTTCTAAACTCATAAGGCATTTATCAAAATCCCATACACAAAAAA TAACACAAATTATCACTTTCGAGCTAGCACACAGCATCTGTAAATACATA ATTTAAACTTAGCTAACATTTAATAAACCAGCGCTAGGCTAAAGCAACAA TGAGTGTGCTAACACACCTCAAAGAAACTAAAGAAAATACTAAACAAAAA AAAAAAAAAAAAGGGAAAGAATCGAAAAATTTTAAACAAAAATAATTGCT CTTGCTAGAGCGTCCCGTTAACTGTCTTTAAAACGGTTTAGTAGATAAGC GATTAAGAAATATTAATATTTAATATTCTTAAAAATGTCCTACAGCATAA AGAGTTAAACTTTAAACTAAGCCACAGCTACAGATACGATATCAACCTAA GCAAATCCGATACGAAAACAAAACATGGATCTATTGTTAATATAGGCATA TGTATTTTAATTGTTGTAATGAATTTCGCGCACATTTGAAAGTCGATTGT TGCAAGTCGAAATCGAAAACTACGAAATTCAATAAAAAGCGCAACTTTAA TAAAAAGATTATTTGTTGTAAATTGAAATTGAACTAATTACCTACTATTG TACTACTACGCCTACGGACATAAAAAATACATTAAAAGAAACCCTTCGCG TATTCTATTAACATAAAATTTGGTAAGAGGAGTGTTTAGATACCAAGAAT ATCCTTGATATGCTATCAAAAGCTTCCAAGGATCTCTGACCACCTTTGAC CAATCCCTGTACTTGTATGTCGCTATATATTTGTGTATGTTTCATATGAG AAATTTGTATGCTTTAAAAATGATAAACTTTCCCTCAGCTAAACAAAGAA CGTCAAAATTAAAGAAAAAAACACTACAAAAATATATAAAACTGTCTTTC ATTGGATTCATATTATGCACTACCCGGGAGTATTCCAAATAAAACGCATC GGTTAGATTCTTTTCATTCCATTTTATGGTATAATTCACCGTCTTTCATT TGCACAATCTGGGCGAAGCTTAAAAATAA
Other Products of this Gene
Other Transcripts
	Name FlyBase ID Length (nt) cnc-RB FBtr0084393 5132 cnc-RC FBtr0084392 6703 cnc-RD FBtr0084397 3572 cnc-RE FBtr0084396 3552 cnc-RF FBtr0084395 3577 cnc-RG FBtr0084394 3794
Polypeptides
Derived from THIS transcript	Name FlyBase ID Length (aa) cnc-PA FBpp0083790 533
Derived from OTHER transcripts	Name FlyBase ID Length (aa) cnc-PB FBpp0083785 805 cnc-PC FBpp0083784 1383 cnc-PD FBpp0083789 533 cnc-PE FBpp0083788 533 cnc-PF FBpp0083787 533 cnc-PG FBpp0083786 533
External Crossreferences
	RefSeq - An integrated, non-redundant set of sequences • NM_170055
Synonyms
	CG17894-RA cnc⁺R2.8 cnc-RA
References ( 4 )
Research paper	McGinnis et al., 1998, Development 125(22): 4553--4564 A cap 'n' collar protein isoform contains a selective Hox repressor function. [FBrf0105883] Mohler et al., 1991, Mech. Dev. 34: 3--9 Segmentally restricted, cephalic expression of a leucine zipper gene during Drosophila embryogenesis. [FBrf0054619]
FlyBase analysis	FlyBase Genome Annotators, 2004, Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. [FBrf0166453] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]