Transcript Dmel\scaf-RA

General Information
Symbol	Dmel\scaf-RA	Species	D. melanogaster
Annotation Symbol	CG11066-RA	FlyBase ID	FBtr0086061
Feature type	mRNA	Associated gene	Dmel\scaf

Evidence Rank	Weakly Supported	Length (nt)	3390
Evidence Score	3

Map ( GBrowse )
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
cDNA Clones Consistent with the Transcript ( 64 )
cDNA Clones, Fully Sequenced
Exact Match
Contained within the annotated transcript, internally consistent
End(s) extend beyond the annotated transcript, internally consistent
cDNA Clones, End Sequence Only (ESTs)
Contained within the annotated transcript, internally consistent	12294 15682 30272 31856 38159 39308 41449 41567 47537 52647 57818 63438 105261 118648 144428 145744 163418 172762 175039 175211 194560 273147 280457 280471 283543 bs57h06 CK01.6C.F8 CK01.12A.H3 CK01.69C.C11 CK01.119A.A8 CK01.125D.A10 CK01.126A.E3 CK01.127A.F5 CK01.144C.G8 EK050403 EK065610 EK090836 EK096533 EK097323 EK114320 EK139317 EK142549 EK152412 EK154747 EK154833 EK165442 EK168857 EK174021 EK175536 EK178648 EK189224 EK230558 EK250857 EK267833 EK272655 EK299953 EK305354 EK305410 ESG0120a.B21_C05 HL01106 LP02349 RP001011898 RP001012296
End(s) extend beyond the annotated transcript, internally consistent	ESG017d.E21_F10
Sequence
	ACCGTCCATTGTGTTTAGCTCGTTGGAAATTTATTTGTTGGTGATGCGAT CTGAACTTTGCTGTTCGTTGTTTCTTACTGTTTTGTTGAATGGTTGCCAA ATGCGCCAACACAAAAATTTGCAGTTTTAATTTATGTGGAAAGCGCCCAC GGAAATGCAGCAGAAACTGCAATAAGCAGACAACACAGCACCATTAGAAC CACCAGCCTCCGAAATAACAGCATCAAAATTCAGTTTGTAGTGGCCTCTG CCTCTTGCCATAAGCCGAAGGAGTTACTACATAGAAGTACTAAATATAAG ATTGACAAAACATTTTGGAGCCGGTTGACATACTGCCCCTAAAAAGAATA AACACATTTTACACGATTGTTTTGGCTAAAGGACCTAAAGGATTTTACAT AGAACTTTTGAATTTTCAATGCTCTTGAGCCCCAGATCCAGAGAATCCGA GCGCCATGTCCGCTTCACACTTCAGGGAGCAGCTCGCCCTGTGCATTACC CTGGCAGTGCTCGCCGCTGCCAGTGGCGACTACCGGGCCAACATGTTTCT CAATGGCCAATATCAAAACGGTATCAAGGATCAAAAGGAGAACAACCTTT TAGTAAACCCCTCGACGAACGTGTTCCTCAACCACGCCATAATCAGCAGG CAAGCGTCGCCGTTCCAGGGCCCAACCTATCTGCCGCCCAAGGAGTTCCT GAAGTGCGCTCCCGGCCAGCAGTGCGTCCGCAGTGGTCAGTGCCTGAACG GATATTTCGCCCAGCAACTGCCCAAGATTCAAAACTGTGATCCGGAAACC ACCGTTTGCTGTACTTACAGGCCGCCTCCCACCACCACAACAACAACCAC TACTTCCGTGCCAGTGGCCAATTGTGCCTACGACTCCGACTGTGTGACTC CGGACAACTGCCGGAACGGCGAAATTAGCGCCATAAACTACGTAAAGAAG CAAGGACCCAACCGCTGCCCTGCTCCTAATATATGCTGCCGCATACCCTC GACCACGCTAACGGAGGATGGGTACATTTTCAACCTTCCGGAAAAGACCT TCCCGCTGCCGACGAAACCAGCAGTGCTCGCGATGCCCTCCACCCAGGCG CCGTTCCGCCCGCAACCTACGACTGCTGTGCCAGCTTCTCGACCCACCAT TGAGTATTTGCCGCCCTCCACCACACAGCATCCCAGTTACGAGAAAGTCC AGACAAGCCGACGGCCAGTCTACTTGCCACCTTCCCCGGCCACTGAGTCG GCCAGCAGTCTCATCCCAAAAATTAGGCCGAGGCCGGAGCCACGCCCCCA GCCGACGCGCCGTCCAACGAATGAGTACCTGCCGCCTGCGGCCGCTAACG AAATCCCTCGCTTCGAGCCTGACCGCGCTCCGCAGCCATCAAACCAGAAG CCAATCTACCGCGGAGAGGACCAGCTGTCGCCTCAGATCTTTCCCACTCC CCAGCCAGCCAATGTTCCAAAACACTTTGCCAAGTGCGCCTCAGCCTTAG TGTGCACCTCTGAGAACTTCTGCAACGCCATCGGAGTGCTTTCTGAGACC CCCGTAGAGCTGTCTCCCATGGAAGCAGCTTTCCGAGTGCCCCTTACGGA CTGTTTGCAGACAGAGAACGGCTCCCCCGGAAAGTGCTGTCGTGACCCTA ACTATGTAGACCCCTGGCCGGTCAACTTAGCCGGAGTGTGCGCGACAAGG AACAAGCGAACGAAGCCCACGGGAGTTAAGGATCTGGATGCAAACTTCGC CGAAATCCCCTGGCAAGCCATGATCTTGCGCGAGTCCAGTAAGACGCTTA TTTGCGGAGGTGCCATCATCGGAGACCAATTTGTTTTGAGCTCCGCCAGC TGCGTAAATGGTCTTCCGGTGACCGACATTCGGGTCAAGGCTGGTGAATG GGAGCTGGGGAGCACGAACGAGCCTCTGCCGTTCCAGCTGACTGGAGTCA AGACCGTCGATGTCCATCCCGATTACGATCCGTCGACAAACTCCCACGAC TTGGCCATTATCCGACTCGAAAGACGTTTGGAGTTCGCATCCCACATCCA GCCCATCTGCATAAGCGACGAGGACCCAAAGGATTCCGAGCAATGTTTCA CCTCGGGCTGGGGAAAGCAAGCGTTATCTATACATGAAGAGGGCGCTCTA ATGCACGTAACCGACACTTTGCCGCAAGCACGCAGCGAGTGCAGTGCCGA CTCCAGCAGTGTGTGTAGTGCTACCAAGTTCGACTCTTGCCAATTCGACG TGGGAAGCGCCCTTGCCTGTGGCAGCGGCTCTAGCGTCCGCCTCAAGGGA ATCTTCGCCGGTGAGAACTCCTGCGGAGAGGGGCAGACAGTACGTTTTGC CAAGCCGGACATTAAGTGGATTAACACTGCGTTCGCCGAAAACAATAAGC CGCTCCTGTTGAAGCGATTTTGAGATGGACTTTAATTCGGAATACGACCA AGGAGCGAGAAAATGTTTGCATCCCGATACTACAGATAAACAGGGTAAAT AACCCAAACACGCTGAGGGGTTATGAACTTGCCATTGCAATTTCGTTGGA GCTCAAAATGGAGGGCATTCCCGATATTATCAATTTATCTATTTTGTTGC ATGCAAGGTTGGAAATATTGCGAAACATTTCTGCGAACGTATTTTTGTTT CCAGATTTGAAATCAACATCTACACAATGCACTTATGTAAATGGTTACCT TCTAATATCTTTGTCTTAAATTATAAATAGAAACGTTAGGTGGAATCGAG AAGTCGTTTATACACAAAATTGATTGTTTATAATAGAAGCTCGCGAACCC AAGTTTTTAAACCCATTTAAATACTATTTTTACTTGTCCACATTCTGAAT GCAGCTCCAATGAAAAAGCTACATTTTACTATCTAGATACAATTTTTCTC ATACAAGTTCGTTCGAATATTATCATATGTTGTATGTATATATACATATA CGTAAATCTTAATGTCAAAAATAACATTTTCTTCAGTGAGTGAGGCCAAC GATGTAGAGTCATAGCTGCATCATGAGTTTGAATCAGTTTGTATCCAGTA CGTGCTCTCGAAGTACGTATGTATGTACATACATGGGGTTTTATGTAAAC GATTCCAGCTATGGGGAGATGTAAAATACTTTGTAATTATAATTATTTTG GAGAAACCAACTCACCGCCAACCAACCACAATTAATAGAGATTATATAAG TTTTAAGACGTGCACCTTCCAAGCAAAGGCCCTAAGCACACACTTAAACC GTACAACGGAATCTCCGCACCAATAAATTTATTGATATTTAAAGTTTTCC CTATATCATAAATTGAATTATATTATGTTTAATGTGTCTAAAAATAGCTT ATAATTTAATTATTAAATAAAGAAAACTAAGATGTACGAC
Other Products of this Gene
Other Transcripts
	Name FlyBase ID Length (nt) scaf-RB FBtr0086060 3043
Polypeptides
Derived from THIS transcript	Name FlyBase ID Length (aa) scaf-PA FBpp0085397 655
Derived from OTHER transcripts	Name FlyBase ID Length (aa) scaf-PB FBpp0085396 655
Comments
	Transcript terminates at site supported by polyadenylated cDNA.
External Crossreferences
	RefSeq - An integrated, non-redundant set of sequences • NM_165441
Synonyms
	CG11066-RA scaf-RA scarface-RA
References ( 2 )
FlyBase analysis	FlyBase Genome Annotators, 2004, Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. [FBrf0166453] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]