Transcript Dmel\Spn42Da-RH

General Information
Symbol	Dmel\Spn42Da-RH	Species	D. melanogaster
Annotation Symbol	CG9453-RH	FlyBase ID	FBtr0086202
Feature type	mRNA	Associated gene	Dmel\Spn42Da

Evidence Rank	Weakly Supported	Length (nt)	1763
Evidence Score	3

Map ( GBrowse )
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
cDNA Clones Consistent with the Transcript ( 70 )
cDNA Clones, Fully Sequenced
Exact Match
Contained within the annotated transcript, internally consistent
End(s) extend beyond the annotated transcript, internally consistent
cDNA Clones, End Sequence Only (ESTs)
Contained within the annotated transcript, internally consistent	76429 76567 145486 214477.34 281216 557702 CK01.3B.A6 CK01.50D.C8 CK01.92A.G12 CK01.120D.A4 EK041744 EK072058 EK092434 EK206543 EK206838 EK252735 EN12231 EP13436 ESG014b.E21_G04 GM27507 LD29516 LP01171 RE27141 RE53279 RE53284 RH61281 RH62218 RP004009100 RP004117366 RP004124128 RP004140990 RP004145909 RP004146212 RP004189491 RP004191419 RP004196249 RP004203307 RP004205129 RP004206050 RP004206501 RP004207290 RP004213654 RP004220411 RP004220931 RP004221344 RP004239455 RP004245337 RP004247451 RP004262217 RP004317197 RP004350814 RP004351378 RP004431849 RP004447264 RP004457204 RP004461548 RP004465622 RP004467821 RP004474005 RP004480809 RP004506508 RP004510584 RP004514411 RP004526175 RP004526278 RP004553320 RP004558507 RP004559255 SD23190
End(s) extend beyond the annotated transcript, internally consistent	RP004248111
Sequence
	AGTTGTTGCTCAAAGGCCACATTATAAAAGTCGAGGGCGATAGCCGGTTT ATAAAAAGAAATTAATTTACACACTCGAAGCCGCTGGTGAAAAACAGTAC CAGCAGTCGGAGCAGGCAGTTAATTACCCTTTCCGATAATCAAGCTAGTG AATCCCCGGCGAAACGGCCAACCGGAGAGATATAGTGAACACCGTTTGTG GAGGTTGCTGGTTGCTCCCCCTGCTCGGCCTAGCCCTCTTCCCGTTTCCA CCGGTCCACACGGCTGACGTCACCATGGCTGACGCCGCCCACCAGGAGTT CGCCCGCCGGCTGGCCCTTTTCTCTATCAACGTGTACGGCAAGCTGTCGG GGCAGAAGCCCGGCGAGAACATCGTCTTCTCGCCCTTTTCCATCCAGACT TGTGCGGCGATGGCCAGGCTGGGTGCAGAAAACGAGACGGCTACCCAGCT GGACCAGGGACTGGGCTTGGCCTCTAGTGACCCAGAGCAAATCGCACACA GTTTTCACCAGGTGCTGGCCGCCTACCAGGACAGTCAGATCTTGCGCATC GCCAACAAGATTTTCGTCATGGATGGCTACCAGCTGCGCCAGGAGTTTGA TCAGCTGTTATCCAAGCAGTTCCTCTCGGCGGCTCAGAGCGTGGACTTTT CCAAAAATGTACAAGCAGCGGCCACCATCAACAATTGGGTTGAGCAGCGC ACCAACCATCTGATCAAGGACCTTGTGCCGGCTGATGTATTGAACTCCGA ATCGCGACTCGTCCTTGTGAACGCCATTCACTTCAAGGGCACCTGGCAGC ACCAGTTCGCCAAACACTTAACCCGCCCAGACACCTTTCACCTGGATGGG GAGCGAACAGTTCAGGTTCCGATGATGAGTTTAAAGGAGCGGTTCCGCTA CGCCGATCTGCCGGCGCTAGATGCCATGGCTCTGGAACTGCCCTACAAGG ACTCAGACCTCTCTATGCTGATCGTACTGCCCAACACCAAGACGGGTCTG CCCGCTCTGGAGGAGAAGTTGCGCCTCACGACCCTCTCGCAGATCACGCA GTCGTTGTACGAAACAAAGGTAGCGCTCAAATTGCCCAGGTTCAAGGCAG AGTTCCAAGTGGAATTGTCTGAGGTTTTCCAGAAGCTGGGCATGTCAAGG ATGTTCTCCGATCAGGCTGAATTTGGAAAAATGCTACAAAGTCCGGAGCC ATTGAAAGTGTCAGCCATCATACACAAGGCCTTCATTGAAGTCAACGAGG AGGGAACGGAGGCTGCGGCCGCCACGGGAATGGTCATGTGCTACGCCTCC ATGCTCACGTTCGAACCGCAGCCCGTCCAATTCCATGTCCAGCATCCATT TAACTATTACATTATCAATAAGGATTCTACTATTTTGTTTGCGGGAAGAA TCAATAAGTTTTGAAGTTAGCACTCCATCAAAATCCACCAATCACAACCA TTGAACTGAAATGCAATGTAATCCCAATTCACAGGACTCAACCGCTCTCT TCGCTGGCAGCATAAAGAAACTCTAAATAGGCAAACATACTAACCAATCC ACAATGTTACTCGAGGGTCTCGTATTCATTTAACGTGCAAGCGGGTCAGT CCTATATTGCTGGCTTGACGAGCATATTCAGCTTTTACATTGTCTATAAG GATTCACAAAATTATAGTCTGTGCGCAATTGATGATCTTATATATACACT TAATATTTTTATACTAACCAAGCATGTAGCCGTAGCCTCAATAAAGTCTA AAAGCAAATGTCT
Other Products of this Gene
Other Transcripts
	Name FlyBase ID Length (nt) Spn42Da-RA FBtr0086197 1505 Spn42Da-RB FBtr0086196 1385 Spn42Da-RD FBtr0086198 1531 Spn42Da-RE FBtr0086199 1643 Spn42Da-RF FBtr0086200 1669 Spn42Da-RG FBtr0086201 1651 Spn42Da-RI FBtr0086203 1370 Spn42Da-RJ FBtr0086204 1490 Spn42Da-RK FBtr0086205 1789 Spn42Da-RL FBtr0300336 2155
Polypeptides
Derived from THIS transcript	Name FlyBase ID Length (aa) Spn42Da-PH FBpp0089193 379
Derived from OTHER transcripts	Name FlyBase ID Length (aa) Spn42Da-PA FBpp0085524 392 Spn42Da-PB FBpp0085523 424 Spn42Da-PD FBpp0089189 411 Spn42Da-PE FBpp0089190 411 Spn42Da-PF FBpp0089191 411 Spn42Da-PG FBpp0089192 379 Spn42Da-PI FBpp0089207 406 Spn42Da-PJ FBpp0089208 374 Spn42Da-PK FBpp0089206 379 Spn42Da-PL FBpp0289565 379
Comments
	Encodes protein variant F (FBrf0151323). Transcriptional initiation is supported by short-capped RNA data (FBrf0209722). Transcript terminates at site supported by polyadenylated cDNA.
External Crossreferences
	RefSeq - An integrated, non-redundant set of sequences • NM_206035
Synonyms
	CG9453-RH Spn4-RH Spn42Da-RH
References ( 2 )
FlyBase analysis	FlyBase Genome Annotators, 2004, Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. [FBrf0166453] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]