A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Transcript Dmel\dj-RA

General Information
Symbol Dmel\dj-RA Species D. melanogaster
Annotation Symbol CG1980-RA FlyBase ID FBtr0089742
Feature type mRNA Associated gene Dmel\dj
Evidence Rank Moderately Supported Length (nt) 1152
Evidence Score 7
Map ( GBrowse ) GBrowse View Help detailed view FBtr0081628 FBtr0089741 FBtr0089742 FBtr0305962 FBtr0081631 FBtr0300904 FBtr0300905 FBtr0081633
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide cDNA Clones Consistent with the Transcript ( 3 )
cDNA Clones, Fully Sequenced
Exact Match
Contained within the
annotated transcript,
internally consistent
End(s) extend beyond
the annotated transcript,
internally consistent
cDNA Clones, End Sequence Only (ESTs)
Contained within the
annotated transcript,
internally consistent
End(s) extend beyond
the annotated transcript,
internally consistent
hide Sequence 
CCACAGACAAATAGTCTCCAGCTGTGGTTTTTTCAAAATTCTTTGTAAAA
CTTTTGGTACAAAATTTAAAAATTTTTCTCGAAATGTTTAAGAGAACCGC
TTTAATTTTACGTCGGTGCTTTCAGCCCACTTTTATACGGCCTCACCACA
TCAATGTCCTTGAGAACTTTAAGGAAGCCGATGACCTTCCCAATCAGGGG
CAAGCAAAATTTGTCGATGTCTCTATTCACGATCCGCAACACATTCGTTC
TGCACTCGTCAGTCCAATGCAACGAAAGTTCTTGCAAGACCTGGAGCAGC
AACAGACTGTTAGGATCAAGTGGTTTAAGGAAGGGAATCAGGATGAACTT
GAAAACATGAAAAATGAATGCCGGAGGCTAGCTCTAGAAATCATCATGGC
TGCTAAAGGTGGCGACATCAAAAAAGCCTGCAAGGAACTGGCTGAAAAAG
AAAAGTGCAAGCAGATAGAACTGAAAAAGAAATGCAAGGAATTGGAGAAG
AAGACGAAGTGCGCGAAGAAAGACCCTTGCAAAAAGAAAGATCCTTGCAA
AAAGAAAGATCCCTGCAAAAAGAAAGATCCTTGCAAAAAGAAAGATCCTT
GCAAAAAGAAAGATCCCTGCAAAAAGAAAGATCCTTGCAAAAAGAAAGAT
CCGTGCAAAAAAAAGGGTGGGGACCTAAAAAAGAAGTGCAAAAAATTGGC
CGAAAAGGAAAAGTGCAAAAAACTGGCCAAAAAAGAAAAAATGAAAAAGT
TGCAGAAAAAGTGCAAAAAAATGGCTCAGAAGGAAAAATGCAAGAAAATG
GCTAAAAAAGACAAATGCAAGAAAAAGTGAAGCTTTCGCGGATTATTCAA
TGAAATACATACGTACCTGGTTTAATTCATTCAGCTCTGTTCAACGCGGC
TTTATCTAAAATATGGTTTTTTCATAATATACAATACGGCATTTTACCGA
AAAATTAGATTTTATTTATTTAAAAAAATAACAAGGGGGAAAACAGTTAA
TGAGCATGTAACCCCCAGCTTTCGAGTAATGAGTCCGTGGCAAGATTTCG
TCGTTCATACGGACAGACTGATAGTCAGACGGTCATGTTTGTTAAGGAAT
CTATCTATATATATATATATAGATTTATATATCATATAAATAAATATGAT
TT
hide Other Products of this Gene
Other Transcripts
Name
FlyBase ID
Length (nt)
dj-RB
FBtr0089741
1132
dj-RC
FBtr0305962
1209
 
Polypeptides
Derived from
THIS transcript
Name
FlyBase ID
Length (aa)
dj-PA
FBpp0088683
248
 
Derived from
OTHER transcripts
Name
FlyBase ID
Length (aa)
dj-PB
FBpp0088682
218
dj-PC
FBpp0297104
187
 
hide Comments
  • Annotation of Isoform A is based on O01352; U90537.
  • Transcript terminates at site supported by polyadenylated cDNA.
  • Unconventional splice site postulated (GT-AA): supported by RNA-Seq data.
hide External Crossreferences
RefSeq - An integrated, non-redundant set of sequences
•
hide Synonyms
CG1980-RA
 
dj-RA
 
dj-RB
 
Isoform A
 
hide References ( 2 )
FlyBase analysis
FlyBase Genome Annotators, 2004, Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome.
Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. [FBrf0166453]
FlyBase, 1996-, FlyBase inference based on genome sequence analysis.
FlyBase inference based on genome sequence analysis. [FBrf0104946]