Transcript Dmel\Ca-α1D-RA

General Information
Symbol	Dmel\Ca-α1D-RA	Species	D. melanogaster
Annotation Symbol	CG4894-RA	FlyBase ID	FBtr0090006
Feature type	mRNA	Associated gene	Dmel\Ca-α1D

Evidence Rank	Strongly Supported	Length (nt)	9425
Evidence Score	15

Map ( GBrowse )
Recent Updates
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
cDNA Clones Consistent with the Transcript ( 22 )
cDNA Clones, Fully Sequenced
Exact Match
Contained within the annotated transcript, internally consistent	MIP09644
End(s) extend beyond the annotated transcript, internally consistent
cDNA Clones, End Sequence Only (ESTs)
Contained within the annotated transcript, internally consistent	18950 46005 79108 120121 214405.32 CK01.13A.E10 CK01.17A.A2 CK01.69A.H11 CK01.87B.G4 EK055330 EK069058 EK104605 EK164460 EK251548 EK290509 EP02617 EP11503 FE527595 GH02129 GH04974 GH15274
End(s) extend beyond the annotated transcript, internally consistent
Sequence
	GTGTGCTTTTGTGGCTGATTCCTTAAACTTGTTCGCGTTGCTGATGGTCG CGTGTGAAAAATACAATAAAATACAACACTGAAAAGCCAGGAAAATCAAA CGAACCAAGGCAATAATATCGAAATTGTAATGTGCAATGTTGATTGTCGA ATAGGGGAAACTAACGACAGGTTATAGGGACACCGTGGAAAGCTGCTTTC ACTTTCTTCGCATGTCCTGTTGTAAAACCACATTATGCTTCAGATCTTCA ATCCTCAAAACGACTCTCCACTGCAGACTAACAAACAAATGCCAAATTTT TACAATCCGCCGCTCTAAACTCGTCCAAACTAAAAACCAAAAAAACCAAA CTAAAAAATACAAAAAAAAATCTAAGTCACCACCGTCGAATTTCTACAAC TATTAAACCATTTTCTAAATACAAAACAAAAAGCTTTTCGCTTATTTAAG TGAGTCTGATTAAAATGTGCATGTCTGTGTGGCGACTGAGACCAAACACA CCTGTTGCTGCGATGCTTTGACCGCGTTTCGCTTTTTGGCTTTTGGCAAG GAAAACGCTCAACGAATAAGGCATTTTAAAGGAAAGGCAATAAATATTGT GCGTCCGAATGAAACTTCAAATATGAATACAGGAGATCGTAAGGAGCAAG CCTCGTTAACACCGCAACAGCAACAATCGCCGCAGCAGCCAGAGCAACAG CAACCAATTACCCGACACGATGCCTTGGATAGTTCTAGTGCTAACAATAA ACTAAATCATAAACACAATAACGATAAGGATAAGGATACCACTAGCGATA AGAACTGGGAGGCGGGCAGAGATTTATTGCCGGCCAGTGTTGTCATCGTC GATGAATCATGTGCCTCGAAAAGTCAGAAACAACCAATCGAGCCGAGCAT TGTTTCGCGAAGTGGAGCCACCTCCTCATCGCAACGTCGCCGGCAATTGC AATTCCAGCGACAAAAGGAGGCCAAACTTTATGACCGCGGAGATGGGGAT CGGGACCGCGAACGGGAGCGGGAAGCCTCGACCTCGACCTCAACCTCGAC CTCCGCCTCCACCACCACCACGAATACTGTGATGGGTGGCGGGGAGCTGG TGAACTGTATAGCCTACGATGACAACACCCTGGTCATCGAGAGGAAACCC TCGCCCTCCTCCCCGTCCACCAGCCGGCGTTATCTGAAGGCCGAAACGCC GACGCGTGGCAGTCGAAAGTACAACCGCAAGTCATCGGCTAAAAGTGATT TGGAAGTGGTCGTTGTCAAGCCGGAACACCATCATCAGCATCGATCTCCG ACGATAACGCTTCCGGTTCCGGCTAACCCACTAACCACATCGGCATCGGC GGGATCCTCGCCCACGGGAGCGGGATTGGCAGCCGGATTGGGAACTGCCT CGGGAACGGTCCTGCAACAAAGCTGCAGTGCACTTGATCCGCCCGAGGAT TCGAATCAGCCCAGCGGGACCAGGAGGCGACCCACCAGCACCGAGCTCGC CCTCAGCAACGTCACCAGTCAGATTGTGAACAATGCCACCTACAAGCTAG ACTTCAAGCAACGTCGTCACAAAAGCAACAACGGAGGCAGTGAGTCAGGA TCTCTAACCGGAATAGCCACAGGACCGGCGACAAGTCCCGCAGGACCAAC AGGACCAACCAGTTCCAGCGGCAAGCGGCGCAAGTCCAGTTGCACATCCT GCGGCGGAGGTGGCATCAGTGCCCCACCCCCGAGACTAACGCCCGAGGAG GCGTGGCAACTGCAACCACAGAACAGTGTTACCAGTGCCGGCAGCACAAA TAGTAGTTTCAGCAGCGGCGGCGGACGTGACGATAATAGTAGTTACAGTG CCGTCGGCGGCGATAGCAGCAGCAGCAATAGTTGCAACTGCGATATCACC GGTGATAACAGTACATTGCATGGTTTTGGCGTCGGCGACGTTTGTAGTTT CATCGCCGATTGTGACGACAATAGCGAGGACGACGACGGCGATCCGAATA ACCAGGATCTCAGCTCGCAAACCCTGCGCACAGCGGCCATCGTAGCGGCA GTTGCGGCAGCAGCCAAGGAACAGGCCCAGGAGCAATCGCTCGCCGACTG CGAGAGCTTCAGCGATCGCCGGCAGGATGCCGATGAGGACGTCCGCATCA TTCAGGATTGCTGCGGCGGCAACAACGACTCACTCGAAGACGTTGGCGAG GTGGACGACAACGCCGACGTTGTCGTGAGAAAGAACTCAAGGAATCGTCC CTCGATCAGAAGGACATGCAGGATAACCGAGGAGGACGACGACGAAGACG AGAACGCGGACTACGGTGATTTCGATCGGGAGGATCAAGAGCTAGACGAC GAGGAGCCCGAGGGCACCACCATTGACATTGATGAGCAGGAACAGCAGCA CGACCAAGGTGATTCCGCTGAAGAGGAAGACGACGACGAGGACGTCGACG AGTACTTTGAGGAGGAGGAGGACGACACGCAGGCCTTTTCGCCATTCTAC TCCAGTTCCGCGGAGCTAATTGATAATTTTGGTGGCGGTGCGGGCAAGTT CTTCAACATAATGGACTTCGAGCGTGGAGCCTCCGGCGAGGGAGGCTTTT CGCCAAACGGCAACGGTGGTCCCGGCAGCGGTGATGTTTCCCGTACGGCG AGATACGACTCCGGGGAGGGGGATCTGGGCGGCGGCAACAATATCATGGG CATCGATTCTATGGGCATTGCAAACATTCCGGAAACCATGAACGGCACCA CAATTGGACCAAGTGGAGCTGGTGGCCAAAAAGGTGGTGCTGCTGCAGGT GCCGCTGGCCAAAAGAGACAACAACGCCGTGGAAAACCGCAACCAGACAG ACCACAACGAGCATTATTTTGCCTGAGCGTCAAGAATCCCCTGCGAGCCC TGTGCATTCGCATTGTGGAGTGGAAACCATTTGAGTTCCTTATTTTGTTA ACCATTTTTGCCAACTGTATTGCCTTGGCTGTTTACACCCCCTATCCGGG AAGCGATTCAAACGTGACGAATCAAACCTTGGAAAAAGTTGAATATGTAT TCCTAGTTATATTCACAGCGGAATGTGTTATGAAAATTTTAGCATATGGT TTTGTGTTACATAATGGTGCATATCTAAGAAATGGATGGAATTTATTAGA TTTTACAATTGTAGTTATAGGGGCGATAAGTACTGCACTCTCCCAATTGA TGAAGGACGCCTTTGATGTTAAGGCCTTACGTGCCTTTCGAGTGCTACGT CCACTGCGACTTGTATCGGGTGTACCAAGTCTACAGGTTGTGCTGAATTC AATTTTAAAGGCCATGGTGCCACTGTTTCACATTGCACTCCTGGTCCTAT TCGTAATCATAATCTATGCGATAATTGGCCTAGAGCTCTTCTCTGGCAAA TTGCACAAGGCGTGTCGCGATGAGATCACAGGTGAATACGAGGAAAACAT CCGGCCCTGCGGAGTGGGCTACCAGTGTCCGCCGGGCTACAAGTGCTACG GCGGATGGGATGGACCAAACGACGGCATCACCAACTTCGACAACTTTGGC CTGGCCATGTTGACGGTGTTCCAGTGCGTCACCCTTGAGGGCTGGACTGA TGTCCTTTATAGCATCCAAGATGCAATGGGCAGCGATTGGCAGTGGATGT ACTTCATTTCCATGGTTATCCTGGGTGCCTTCTTCGTGATGAATCTGATT CTCGGTGTGTTGTCCGGTGAGTTCTCCAAGGAGCGTAACAAGGCCAAAAA CCGCGGCGACTTCCAGAAGCTGCGCGAGAAGCAGCAGATCGAAGAGGATC TGCGGGGCTATCTCGATTGGATTACCCAAGCCGAGGACATTGAACCAGAC GCCGTGGGAGGTCTGATATCCGATGGCAAGGGCAAGCAGCCCAACGAAAT GGATTCCACCGAGAATCTGGGCGAAGAAATGCCCGAGGTCCAAATGACTG AATCACGATGGCGCAAAATGAAGAAGGACTTCGATCGAGTCAATCGTCGA ATGCGAAGAGCCTGTCGCAAGGCAGTCAAGTCGCAGGCCTTCTATTGGCT CATCATCGTTTTGGTGTTTCTCAATACGGGTGTCTTGGCCACGGAACATT ATGGCCAACTTGATTGGCTAGATAACTTCCAGGAGTACACCAACGTGTTC TTCATCGGACTGTTCACCTGCGAAATGTTGTTGAAGATGTACAGCTTGGG CTTTCAGGGCTACTTCGTTTCGCTGTTCAATCGTTTTGATTGTTTTGTGG TGATTGGCAGCATTACGGAAACCCTACTAACGAATACGGGAATGATGCCG CCATTGGGTGTCTCCGTGCTGCGTTGTGTACGTCTCCTGAGAGTCTTTAA AGTAACTAAATACTGGCGGTCTCTCTCAAATCTCGTCGCTTCCCTATTGA ACTCTATACAATCGATTGCTTCACTTTTGTTACTGCTCTTCCTATTTATT GTGATATTTGCTCTGCTGGGCATGCAAGTTTTTGGCGGTAAATTTAATTT TGATGGCAAAGAGGAGAAGTATCGAATGAACTTCGACTGCTTCTGGCAGG CTCTACTCACAGTGTTTCAGATCATGACTGGCGAGGATTGGAATGCTGTG ATGTATGTGGGCATCAATGCCTATGGCGGTGTGTCCTCCTATGGTGCCTT GGCCTGTATTTACTTTATTATTTTGTTCATATGCGGTAACTACATCCTGC TAAACGTGTTCTTGGCCATTGCTGTGGATAATTTGGCCGATGCCGACTCG CTCTCTGAGGTCGAAAAAGAAGAGGAACCTCACGATGAATCTGCTCAGAA AAAGTCACATAGTCCGACTCCAACAATTGATGGCATGGATGATCACCTCA GCATAGATATCGATATGGAGCAACAGGAACTGGATGACGAAGACAAAATG GACCATGAAACATTATCAGACGAGGAAGTTCGTGAAATGTGCGAGGAGGA AGAGGAAGTGGATGAAGAAGGCATGATTACAGCACGACCCCGACGTATGT CTGAGGTTAATACGGCAACGAAAATTCTACCCATACCGCCGGGCACATCA TTTTTTCTTTTCTCACAAACGAACAGATTTCGCGTCTTCTGCCACTGGCT TTGCAATCACAGCAATTTCGGCAACATTATCCTGTGTTGCATTATGTTTT CATCGGCTATGTTGGCAGCAGAGAATCCTCTGAGAGCCAATGATGACCTG AATAAAGTGCTCAATAAATTTGATTATTTTTTCACGGCAGTTTTCACAAT AGAACTGATTCTGAAATTGATTTCATACGGCTTCGTATTACACGACGGAG CCTTTTGCAGATCCGCATTTAATCTATTAGATTTACTTGTGGTCTGCGTG TCATTGATTTCTCTAGTGTCCAGTTCGAATGCGATTTCAGTCGTGAAAAT TCTACGTGTGCTCCGTGTTTTAAGGCCACTCAGAGCCATTAATCGTGCCA AGGGACTGAAGCATGTTGTTCAATGTGTCATAGTCGCTGTTAAGACTATC GGAAATATTGTGCTCGTCACATGCCTACTGCAGTTCATGTTTGCCGTAAT AGGAGTCCAATTGTTTAAGGGCAAATTTTTCAAGTGCACTGATGGTTCCA AAATGACTCAAGATGAATGCTACGGAACCTATCTGGTCTATGATGATGGC GATGTTCATAAGCCGCGACTCAGGGAACGGGAATGGAGTAACAATCGCTT CCACTTCGATGATGTGGCCAAGGGCATGTTGACTTTGTTCACGGTGTCCA CATTTGAGGGCTGGCCAGGTTTGCTGTATGTTTCAATTGATTCGAATAAG GAAAACGGCGGTCCAATACACAACTTCCGTCCGATCGTAGCTGCCTACTA TATAATCTACATTATTATTATTGCCTTCTTCATGGTGAACATATTCGTCG GTTTCGTTATCGTCACTTTCCAAAATGAGGGTGAACAGGAATATAAGAAT TGTGATCTGGATAAGAATCAGCGCAATTGCATAGAATTTGCCTTGAAAGC GAAACCCGTTAGACGCTATATACCAAAGCATGGTATACAATATAAGGTCT GGTGGTTCGTCACGTCGTCATCCTTCGAGTACACAATATTCATACTGATC ATGATAAACACGGTAACGCTGGCTATGAAGTTTTACAATCAGCCGCTGTG GTACACGGAACTTTTAGATGCCTTAAATATGATATTTACGGCGGTGTTTG CTTTGGAATTTGTCTTTAAATTAGCCGCGTTTCGATTTAAGAACTACTTT GGAGATGCTTGGAACGTATTCGATTTTATCATCGTTTTAGGCAGTTTCAT AGACATTGTCTACTCTGAAATTAAGAGCAAGGATACTTCTCAGATAGCAG AATGTGACATAGTAGAGGGCTGCAAATCCACCAAGAAATCAGCTGGTTCA AATTTAATATCCATCAATTTCTTCCGACTGTTCCGAGTTATGCGACTCGT CAAGCTTCTCAGCAAAGGCGAAGGCATTCGAACATTACTGTGGACTTTTA TCAAATCCTTCCAGGCACTGCCCTACGTAGCCCTGCTAATTGTGCTTCTA TTTTTCATTTATGCGGTTGTGGGGATGCAAGTGTTCGGCAAAATTGCTCT AGATGGTGGAAACGCCATCACGGCCAATAACAATTTCCAAACGTTCCAGC AGGCTGTTTTAGTACTCTTCCGATCGGCCACCGGAGAAGCTTGGCAGGAA ATTATGATGTCCTGCTCGGCGCAACCGGATGTGAAGTGCGATATGAATTC AGATACGCCGGGAGAACCATGCGGTTCCTCAATAGCCTATCCGTACTTTA TTTCCTTCTATGTTCTCTGCTCGTTTTTGATTATTAATCTTTTCGTGGCC GTCATTATGGACAACTTTGACTATCTGACTCGTGATTGGTCGATTTTGGG TCCCCACCACCTGGACGAGTTTATTCGCCTTTGGAGCGAATACGATCCGG ATGCAAAGGGACGCATCAAACACTTGGATGTGGTCACATTGCTGAGAAAG ATCTCCCCACCACTTGGCTTCGGCAAACTGTGTCCACATAGAATGGCCTG CAAGCGACTGGTTTCCATGAACATGCCTCTTAACTCAGATGGAACGGTTC TCTTCAATGCCACACTGTTTGCTGTGGTCCGCACTTCGCTGAGCATCAAA ACTGACGGTAATATCGATGATGCCAACTCCGAGCTGCGCGCCACTATCAA GCAGATCTGGAAGCGTACCAATCCGAAGCTTCTGGATCAGGTTGTACCAC CGCCGGGCAACGATGACGAGGTGACCGTCGGCAAGTTCTACGCCACATAT CTAATTCAGGACTACTTCCGGCGCTTCAAGAAGCGCAAGGAACAGGAGGG CAAGGAGGGTCATCCGGACAGCAATACAGTCACGCTGCAGGCCGGCTTGC GAACCCTACACGAAGTGTCCCCAGCTCTAAAGAGAGCCATCTCCGGCAAT CTCGACGAGCTGGACCAGGAGCCGGAGCCCATGCATCGTCGTCATCATAC GCTTTTCGGCAGCGTGTGGTCATCGATCCGCCGACATGGAAACGGAACCT TCAGGCGAAGTGCCAAGGCAACTGCTTCGCAGAGCAACGGAGCCTTGGCG ATCGGTGGATCAGCGTCCGCGGCCTTGGGTGTGGGCGGTAGCTCGCTGGT CCTGGGAAGCAGCGATCCCGCTGGCGGGGATTATCTGTACGACACTCTGA ACCGCAGCGTAGCCGACGGAGTGAACAATATAACGCGGAACATAATGCAG GCCCGTTTGGCGGCAGCCGGAAAGCTGCAGGACGAACTGCAGGGGGCAGG AAGTGGCGGAGAGCTAAGGACATTCGGCGAGAGCATATCCATGCGACCGC TGGCCAAAAATGGAGGCGGAGCGGCCACTGTGGCCGGAACACTGCCGCCT GAGGCGAATGCCATTAACTATGACAACCGCAATCGTGGTATTTTATTGCA TCCATATAACAATGTCTACGCACCCAATGGTGCTCTTCCTGGCCACGAAC GCATGATCCAATCGACACCAGCTAGTCCCTACGATCAGCGTCGTTTACCA ACTTCATCTGATATGAACGGTCTAGCCGAATCATTGATTGGAGGGGTACT CGCCGCTGAGGGATTGGGTAAATACTGCGACTCCGAGTTCGTGGGGACTG CTGCACGGGAGATGCGCGAGGCGCTGGACATGACGCCCGAGGAAATGAAC CTGGCCGCCCACCAGATCCTCTCTAACGAGCACTCGCTGAGTCTGATCGG CAGTAGCAATGGTAGCATCTTCGGTGGATCCGCCGGTGGCCTGGGAGGGG CTGGATCTGGAGGTGTGGGTGGATTGGGCGGTAGTAGCAGCATTCGCAAC GCTTTCGGCGGAAGCGGAAGTGGACCGTCCTCACTGTCGCCGCAACATCA GCCTTACTCGGGCACTCTGAACTCACCACCGATTCCGGATAATCGTCTGA GACGTGTTGCCACAGTCACGACCACAAACAATAACAATAAGTCCCAAGTT AGCCAAAACAATTCGAATAGCTTAAATGTTAGGGCTAATGCCAATAGCCA AATGAACATGTCACCAACTGGACAACCAGTGCAGCAACAATCGCCGCTAA GAGGACAGGGCAATCAGACTTACTCCTCATAGCACCCACATTGTAAGCTA TACATACAGAATGTCTTCTTGATGGAACTTTAAGTGTGCATTCAGCGCAA GCTGAGGTTTATTGGCTAATTTATTTGTTATTTTTAGCGAAGAAAAACAC ATTAGTCTTAGCATCGGGAATTGTTATATTTGAATTGTTCGCACACACAC AAGCGGGAACCAAACCAACAAAACTTGTATAACTTGTATAAAGAAAATCA GCTAATTGTATATGTATAAATATATTAATGTTTTTGCCTTTTTGAGAAAT CTATCGTGGGCCTTCGTCCTCTAACGAGCCAGAAAACCAAAAAACCAACA ACACTAAACTGAACAAATTAAGGAAAAATGTATATTTTTGGATAAAAAAA AAAAAGAAAAGAGGAAACCAACCTAAACTGATAACGTTTAACTTCTAATT AGAAATATAGATCAAAACCAAAAATATATAAATAAAAACCACACCAATAT AATTGATTAGGTAATAATCACCAAAACGGAAATGAAATAATTATACATTA ACATTGAACATTACATTATTGAGAGCGACAGTGTAATTACCTATTTCGAT TTAGACGCATTTTATTTTTTAAGTATTTAAAATATGAACAATTTACGATA AAAGGAATTGTTTACTATATATGTAGCAGACATACATATATGTATAAAAT TCATAAATGTAATAGCATAATTTCAAACTGAACGAGAGTCCCAAGCCCCT TAAAAAGTAATGTAAACTGAATTTTAATTGTTATGATTGAATTTTTACAA TAAAACCGAGAAAATGTGAGAAAAT
Other Products of this Gene
Other Transcripts
	Name FlyBase ID Length (nt) Ca-α1D-RB FBtr0090005 8973 Ca-α1D-RC FBtr0090004 8986 Ca-α1D-RD FBtr0090003 9298 Ca-α1D-RE FBtr0332020 8968 Ca-α1D-RF FBtr0332021 7881 Ca-α1D-RG FBtr0332022 8226 Ca-α1D-RH FBtr0332023 7881 Ca-α1D-RI FBtr0332024 7890 Ca-α1D-RJ FBtr0332025 8450
Polypeptides
Derived from THIS transcript	Name FlyBase ID Length (aa) Ca-α1D-PA FBpp0089049 2516
Derived from OTHER transcripts	Name FlyBase ID Length (aa) Ca-α1D-PB FBpp0089048 2519 Ca-α1D-PC FBpp0089047 2552 Ca-α1D-PD FBpp0089046 2300 Ca-α1D-PE FBpp0304336 2546 Ca-α1D-PF FBpp0304337 2023 Ca-α1D-PG FBpp0304338 1799 Ca-α1D-PH FBpp0304339 2023 Ca-α1D-PI FBpp0304340 2026 Ca-α1D-PJ FBpp0304341 2059
Comments
	Extended 3' UTR based on EST and RNA-Seq data. GC splice donor site postulated Transcriptional initiation is supported by short-capped RNA data (FBrf0209722).
External Crossreferences
	RefSeq - An integrated, non-redundant set of sequences • NM_134429
Synonyms
	Ca-α1D-RA CG4894-RA
References ( 2 )
FlyBase analysis	FlyBase Genome Annotators, 2004, Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. [FBrf0166453] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]