Transcript Dmel\Hr46-RE

General Information
Symbol	Dmel\Hr46-RE	Species	D. melanogaster
Annotation Symbol	CG33183-RE	FlyBase ID	FBtr0302438
Feature type	mRNA	Associated gene	Dmel\Hr46

Evidence Rank	Strongly Supported	Length (nt)	6385
Evidence Score	11

Map ( GBrowse )
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
cDNA Clones Consistent with the Transcript ( 63 )
cDNA Clones, Fully Sequenced
Exact Match
Contained within the annotated transcript, internally consistent	IP05237
End(s) extend beyond the annotated transcript, internally consistent	DPiM_GH21112 GH21112
cDNA Clones, End Sequence Only (ESTs)
Contained within the annotated transcript, internally consistent	19325 21119 29205 64601 69271 77287 81563 83819 144324 165316 172453 214257.35 214449.37 281580 CK01.11C.C10 CK01.29D.F7 CK01.30B.E4 CK01.54B.D11 CK01.76A.C8 CK01.78D.H2 CK01.84A.A8 CK01.86B.E12 CK01.86B.G12 CK01.93C.D5 CK01.109D.D12 CK01.128D.H12 CK01.145B.D6 EC05801 EC23201 EC29501 EK026316 EK044516 EK059408 EK059444 EK066902 EK066936 EK068250 EK068258 EK072915 EK099764 EK102706 EK113708 EK119447 EK135414 EK160303 EK192947 EK196327 EK210655 EK218449 EK227602 EK250722 EK256804 EK269856 EK273227 EK281407 EP12129 EP14246 GH22109 IP05337 IP15760
End(s) extend beyond the annotated transcript, internally consistent
Sequence
	ACTCGAATTTGGGACACATTCCTGTAAAGGACGCAGCTCCGGTCAGCTGC TTCGCAAAATCGACAAAAAGGAGTCACAAAAAAACGCGCGCGGTGCATTT AGCCACAAATCTCTGAAAGTGAAAATACAAATATTGAAACAGTGAAATCC ACAAACCAGCCAAAAGTGAAACAAAATTGAACACAGTGCTTAATTAATAT CGAAGCTAAAGGGATAGAAATCCGATTAGGAAAAGGGAAAGCTGCAGCGC TGCTCCTGTTTGCCAAATATTGATTCGCAAGTGTGCCGCTGAAAAATCGA TTATTAAAGCCACTTTCCACACAGCTGGTGGTTGTTGTTGCCGTGAGGAT GGAGGTGGTGCTTGGGGTGGTGGTTGCATAGGGTTGCGTGCCGCGATGTG GGAAATCAACAGCAACATTGGCACATCCACATCCAGATCCAGAGGCACAC TTCCAACTGTTTTGACGTGGTCGGGTTCCAATGGCGCTGACACTACCGAA TGCTGCAGCGCAGCCTTGCAGCCATCCAGCGGCGACGCGTTGCATGTGCA GCAGCAACAGCAACAGCAGCAGCAACATCAGCAGCAGCAGCAGCAGCAAC AGCAACAGCAGCAACAACAGCAGCAGCAGCAGGATACGAAAACGAGGATG ACAACGACCACAGGCAAACGCGGAGGACACAGATACAGAAGCAGGCTCAG TCACCGAAGCACAGCAACAATTGCTGCATATTAGGCAGTAAAGTAAAGTT AAACACAACCCAAAACCGAAAAGACTAGCCCAAAATTTACTCAAAAACCA ACACAAGTGGAAAGCATTAATCGGAATGTCGAACTCTATGCATCGCACAA AGTTACGTTAAGTATACGACGCGTATTTCCAGCTGCAAAACGAACCAAAA ACGAACCGAACGAAACGAAACGCACAGGTGCATCTGCAGACCCCACTACG CCCCTAAAAGCCCACTCCCCCCCCTTTTCGAACCCTCAGCCCCTCATTAG GCCACCCCCTCTGGGGTATCTACACCAATTGACAAGCAATCGAGGCAATG CAGTATGAATGAACTTGTTTAGTCGACAATTTTTTAAGTGCACTTTCGTA AGGCTGATTTTCAATTTATTTCGATGTTGTGCTTCTACACCCAAAAAAAA AACCAAATATAACAAGTAACAAATACAAGCATAAAAGAACCCAAGAAATT CAAGCAATGAACCAAGTGAAAGTGCCCAGAGATCTCCTGCTGATACAGCA GGCCAAGCCCGCCGGCGGCAGCAAATCCTCCAGCGGTGGTCCAACGTATA TCGGCACCGATGCCGCCACAGCAGCGGCGGTGGCCAATCTGCGCAGCAAG GTGCCCTCCATCTCAATAATCCCGCTGCCCGTCTCGACCACCATTGTGGC ACGCAGTGGTAGCGGTGCCTCTGGCACTGGCGGCAGTGGAGGAGCACCGC CAGCACTGCCCCAGCTGATCCAGTCGTCGCGGAGTGTGTCCACCAAATCC ACGGGCACGTCTCCACCATTGGCCTTTATAACGGAAGGTTCTGGAACATC GGGTGCTCCCGCCCTGACACTGCTGCCACGACCCCAGCAGCAGCACCAGT ACCAGCAGACCGACAAGTGCACGGTCCTCAAACTGGACGTACTGAAGCAG CAGTCGGGTGTGGCAGCCAACTCCAGCAGTAATACCTACCTGCAGATCGA GCAGCAGCTCAGCGAACTGGAGGCCGCCGACGAGGAGGAGGAGAACATGG CCAGTTTGCTGGGCAGTGCGCCACCCGCCCAAATCCTGGCCAACCAGCCC ATCATCGTCAAGATCGAGCCCACGCAATCCTTCCACATCGTGGACGAGGG CGACACGAGAGTACTGAGCTTGCCCCTCAGCGATGCTGATAAGCTGGGCG CCAGTTGGATAGATCTCAAGGATATTGCCGGCCTACAGGCCGGTGGCGGA GCCACCTTGCTGGACGTCTGCTTCGAGCAGGCCAACGAGGACGGCACCAT CATAGCCACCGTGCAGCCGGACTTGGAAAACGAGCTCGAGGCTGAGCTAA AGGCGGAGGGCGAGCCCGAGGATGAGACTGAACCAGAGCCTCCGGCGCCC AAGAGATTGGCGACCACCAGGCCAGCACAGTCGCGGCCACAACAGCAGCA GCAACAGCAGCAGCAGCAGGTGAAATTCCTATCGGATCCACCGGCATTGG CACGCTCCAGCAGCTTCAGCAGTCTCAGCAGCTTTAGCAGCATCAGCAAT ATCAGTTCCGTGTGCAAGAACATGGCCAGCAATACCAGCCAGGAGGGCTC CCTAAAACGCACAAAGGAGCGAACTCCTCCACCAATGCCACCGCTCACGA CTCACAAGCCCGCTGCCACAACAACAGCAACATCAGCAACATCTGCAGCC GCAGCAACATCAGCAGCAACAGCAAGTGCAACAGCAACATCGGCCAGAGA AAACAGCAGAGAGCACAGCAGCAGCAGCAGCGGCAGTAATGGAGCCATGA CAGCTCAAATTGAGATAATTCCATGCAAAGTCTGCGGCGACAAGTCATCC GGCGTGCATTACGGAGTGATCACCTGCGAGGGCTGCAAGGGATTCTTTCG AAGATCGCAGAGCTCCGTGGTCAACTACCAGTGTCCGCGCAACAAGCAAT GTGTGGTGGACCGTGTTAATCGCAACCGATGTCAATATTGTAGACTGCAA AAGTGCCTAAAACTGGGAATGAGCCGTGATGCTGTAAAGTTCGGCAGGAT GTCCAAGAAGCAGCGCGAGAAGGTCGAGGACGAGGTACGCTTCCATCGGG CCCAGATGCGGGCACAAAGCGACGCGGCACCGGATAGCTCCGTATACGAC ACACAGACGCCCTCGAGCAGCGACCAGCTGCATCACAACAATTACAACAG CGGCGGCTACTCCAACAACGAGGTGGGCTACGGCAGTCCCTACGGATACT CGGCCTCCGTGACGCCACAGCAGACCATGCAGTACGACATCTCGGCGGAC TACGTGGACAGCACCACCTACGAGCCGCGCAGTACAATAATCGATCCCGA ATTTATTAGTCACGCGGATGGCGATATCAACGATGTGCTGATCAAGACGC TGGCGGAGGCGCATGCCAACACAAATACCAAACTGGAAGCTGTGCACGAC ATGTTCCGAAAGCAGCCGGATGTGTCGCGCATTCTCTACTACAAGAATCT GGGCCAAGAGGAACTCTGGCTGGACTGCGCCGAGAAGCTTACACAAATGA TACAGAACATAATCGAATTTGCTAAGCTCATACCGGGATTCATGCGCCTA AGTCAGGACGATCAGATATTACTGCTGAAGACGGGCTCCTTTGAGCTGGC GATTGTTCGCATGTCCAGACTGCTTGATCTCTCACAGAACGCGGTTCTCT ACGGCGACGTGATGCTGCCCCAGGAGGCGTTCTACACATCCGACTCGGAA GAGATGCGTCTGGTGTCGCGCATCTTCCAAACGGCCAAGTCGATAGCCGA ACTCAAACTGACTGAAACCGAACTGGCGCTGTATCAGAGCTTAGTGCTGC TCTGGCCAGAACGCAATGGAGTGCGTGGTAATACGGAAATACAGAGGCTT TTCAATCTGAGCATGAATGCGATCCGGCAGGAGCTGGAAACGAATCATGC GCCGCTCAAGGGCGATGTCACCGTGCTGGACACACTGCTGAACAATATAC CCAATTTCCGCGATATTTCCATCTTGCACATGGAATCGCTGAGCAAGTTC AAGCTGCAGCACCCGAATGTCGTTTTTCCGGCGCTGTACAAGGAGCTGTT CTCGATAGATTCGCAGCAGGACCTGACATAACAAGAGCAGCAGCCGTTCC TGGAGACGACCGCGGACGATGTTGCCGAGGATGCGGCTGCCGCCGGATGT GTCCTGCCGCCGGTGGCGCCCCCTGCCGGGCAGCAACCAGCGCTGCTCGA GGACTGAGGGCCGCAGGATGTGGCAACAATAATTATTTGAGTAAACACTG CACTGCGCATGCAGCAGATACAAGAACTTTATCATGATTTAAGCTAGCAT ACAACCAAGGATGTGATCCTCGCCAAGGACTCACTTAAAAAGAACTCTAT CTATATACATATATATATTATATATGACAGAGCGGATGACGCAAAGGGAA GGGAAAATATTTCAAAAATATTGTTAACTCAGTTAAGACTTTTGCTTCGT AGAGAACCGAAACCGAAACCGATTGCATTTCGAGCAAGGGGCATCAAACT GATTTTCGAGGTTATACTATACATATATACACACAAACACACACACACAC ATATATATATATGTAACTTCCAAACTTTCATATCCTGGCCCGAGCAGATC AGATCGTCTAAGTACTTAAAACCAAGCGAAATTCTCTACACCGCACAACC CAGGACCCGTAGACCCCAATAATTCAGTTCGGTTAGTGTTAACCCCAGAA AGCCCGATTCCGATCCCGCCTAGGTTGTCTTTGCCTTACGTTGTAACTAA AGTATGTGTATTATATATACAGCAAATGTATGTATAACTATGTCGTATCG GTTATATGCCTAACAACATTATTTTTTGTAAACAACAAAATCGAATATCT CGGAAAATGTGTTCTTATAATTATATTGATTAATGCAATTACAATATATT TACAATTTACCGTTACGTTTTTACATTATACATAAGACGCAAGAGAAGGA AACGGAAGTTTAAGGATTAGAAAGCTGAATAAGAAAAGGCTTAAGGACGA GCTGAGTAGCAGTTAAAGTGAGCGAGAAATCGAATGAATACCAGAAAATT TCAAGCAAGCACATAAAAGTATGCAATATTTTGTTTAAAAACAACTTTTT ATTAGTTTCTTAAATATAACATAATTACGTACATACACACACGTATATAT AGGGCTATATATATCTATATATATATATATATACATGATAGACAAATCCC AATCCGGTTCCAAGGTTTAGTAAAAATAAAGAGAAATAAAACGAAAAACA AAAACTTTTGATATGAAATCCTACGCATAATTAACAACTTTTATTGTTTC TAAGACTTAAACTTAATTAAAATGGAAACCAAAACAGACTGACGGACCGA CCCCGACAGCATGCCACGCCCTCCCCCGCCCCACCCTCCACAGATCCTGG CAGAAATTTCAAAGGAGTTTGATACACAAATCGAGAAAAGAAATTTTCAA AAAAATAATATAAAGACAAGCAAACGGCGACTTTTTTGGTTGATACATTT GAAAAGAATATACAATTAAATATCTGACTGACTATACAAAGACGTTACAC ACACGCATACACATACACACACATACACGCATACACACACAGCTTACGAT ACATAAATTAGTTAAACTTAGAGTAAACAAACAACAACAAACACATTGGA TAGTAGGTGATAATTGGTGTGTCTTAAATAAACCTTAACCCCTCCCCGAC CCCCGCCCACTTGCTTAATACCCAACGCCCCAAAAAGCCCCACATTTCTA CTAAATGAAAAGCTTAATCAAAACTTTTTTGAAATTATTCAAGTGAAAAT TTCAGCAGGCAGGCATAAATATTAATTAACATTAATTATAGCAAGGAAAC TTATAAATAAAATGTATACAACAAAACTACAAAAATTAAATAAATTACAT TTTGCAAATTCCACAAAAAATAAAACATGATTTTGCAAATTCACTTAAAA TCCTTTCCCTGAATCCAAGCAAAAATATTTACACTAGCTTACATAGAACT GGGACGAGGACATGAATATTTCAATTGAGAAAAAAATCTATGTTAATGTA ATCGATCGATTTGGACATATTTAAGTTCGACATTTTTGGCCTTACAAAAC AAAAAACAAAAAGAAGAAACCTAAAGTACTTTATATATATACAAACCATA TATACAATATAGAGAATACAAAACTAGTTTTAATTTATACAAAGCAAGGG AGCAGCTTTCAAACTCAAAACAAAAATATCCCCGAAAAAAACAACAACTT TGTTAAAAACTGCGCATAATAAAGAAAATAATAAACAAAGTTAATCTATA ATATAAATTGAAGTTAAGTTGATTTGAGCGGTCGACAACAAGAACATAAA TGTATCTTTAAATGATATATGTATTGTTAAATTTGTATGCTAAGTTTTTA GAAAGGTTACATTTTTAAAGAATAATAACAAAAGATCGCGAACTCGACAA GGTGTAAAATGAGTACATTTAAATTAAAATTTAGCATATATAATGCATAA ATATTATGTTACGATATTTACATTTATATAAAACAAAACAAAAACACTAA AGAAAACCGAAAAAACAGAAGTCCCATATTAAAAATGAAATAAAATGAGC AGAACCTATAAACTGATAAGGGAATTCTGAATATT
Other Products of this Gene
Other Transcripts
	Name FlyBase ID Length (nt) Hr46-RA FBtr0088368 6071 Hr46-RC FBtr0088366 6466 Hr46-RD FBtr0112799 4233 Hr46-RF FBtr0306345 7407 Hr46-RG FBtr0306346 4170 Hr46-RH FBtr0330609 6071
Polypeptides
Derived from THIS transcript	Name FlyBase ID Length (aa) Hr46-PE FBpp0291630 874
Derived from OTHER transcripts	Name FlyBase ID Length (aa) Hr46-PA FBpp0087456 487 Hr46-PC FBpp0087454 694 Hr46-PD FBpp0111711 456 Hr46-PF FBpp0297438 487 Hr46-PG FBpp0297439 372 Hr46-PH FBpp0303459 529
Comments
	5' end based on species conservation data. Dicistronic transcript; alternative monocistronic transcript(s) exist. Transcriptional initiation is supported by short-capped RNA data (FBrf0209722). Transcript terminates at site supported by polyadenylated cDNA.
External Crossreferences
	RefSeq - An integrated, non-redundant set of sequences • NM_176122
Synonyms
	Hr46-RE
References ( 1 )
FlyBase analysis	FlyBase Genome Annotators, 2004, Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. [FBrf0166453]