Transcript Dmel\Cirl-RH

General Information
Symbol	Dmel\Cirl-RH	Species	D. melanogaster
Annotation Symbol	CG8639-RH	FlyBase ID	FBtr0305082
Feature type	mRNA	Associated gene	Dmel\Cirl

Evidence Rank	Strongly Supported	Length (nt)	7805
Evidence Score	15

Map ( GBrowse )
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
cDNA Clones Consistent with the Transcript ( 131 )
cDNA Clones, Fully Sequenced
Exact Match
Contained within the annotated transcript, internally consistent
End(s) extend beyond the annotated transcript, internally consistent	SD04590
cDNA Clones, End Sequence Only (ESTs)
Contained within the annotated transcript, internally consistent	504 678 1238 1476 10349 14490 28699 31988 36640 54680 56589 57061 63724 63923 66226 73823 75211 78936 100167 102314 104158 105094 105736 120364 123632 125759 146621 147606 156925 158671 158703 166023 180792 191860 214257.39 214307.29 214339.2 214417.37 214543.1 275154 533569 533604 CK01.11C.E4 CK01.12C.E7 CK01.12C.E8 CK01.14B.F4 CK01.14D.E12 CK01.35D.C2 CK01.49A.E1 CK01.49D.F6 CK01.54B.F7 CK01.54D.C10 CK01.66B.G8 CK01.68B.G9 CK01.68B.H12 CK01.90D.A6 CK01.92A.G11 CK01.92C.B6 CK01.94B.A12 CK01.103D.D11 CK01.117B.B10 CK01.120B.G6 CK01.126D.E3 CK01.129B.C2 EC01216 EK013913 EK013937 EK014854 EK030431 EK038827 EK041017 EK041355 EK044124 EK044343 EK053860 EK054825 EK054862 EK071135 EK072026 EK073336 EK087114 EK091859 EK095741 EK097118 EK110261 EK116538 EK121422 EK121852 EK122349 EK122415 EK136530 EK142559 EK147052 EK151305 EK165408 EK169249 EK170556 EK173833 EK179913 EK190514 EK190863 EK193727 EK196118 EK206234 EK216608 EK222926 EK223704 EK229952 EK243248 EK246522 EK249237 EK259762 EK261612 EK270938 EK294421 EK303340 EN09754 EN09837 EP06442 EP08223 EP10231 EP10930 EP11746 FGM317F06 LD02292 LP10486 LP12734 LP15459 LP19931 RE32104
End(s) extend beyond the annotated transcript, internally consistent
Sequence
	ATTGTGAATCGAGCTCTCAAGCGAATAGGATCGTCTGCGTTGTATGGAGT TTAATCCGAAATATAAGTGTAATAATTGCCCAAAGTGAAGTAAAACCTAG TGCTAACCAAGGAGCAAAGCATCCGTGAATAAAAAAAAACAAAAAAGCAA CTTAAAGCCAGTCTTTTTCGTGGCTTTGGCATCATCAATAACTAAGCCAA CAAATCGCTCTGAAAATCGCCAACTGGCGACAGAAATCAACGGGAAAACT TCATTCCGAGTTTAAAAATGTTTTATTCTCGCGGAATTCAAGAAACGTCC ACAGTTTTCAACGTGAAAAAAATGCCCGGAGTTGGAACAAAGAAAGACAC CCAAACTGGGGCTCCGCGGGGCAGAAAAAACTCGAAGCGCAGCTGCAGCA ACTTTTCTCTACATTTACATCCACATGCATATATGTTCGTGAATAGTGTG CATCGGGTGTACAAAGAAAACGGGTCTTTGTTCTGTCCACGAATCGATGG CCATGCAACAACTACAACCACAGTGTGGATACATAAGTTGAATGGTACTT TTGAGTCCAACTTTCATGAATATGACTCCAAACGGAAATACATAAGAGTT TGAATACTTCAAACCGAGTGAAACACTGCCGAATGAGCATTGCCGATAAG AACCAATGATGGACGATCGATGATTCGTGATCTGGGCCGGCAGGATTTGG TATTTATGACTACTATTGCACTTGCTACCAAGCTAACGACCCACATACTC CACCATCAACCTCAGCATTACTAAGTATATCCCAGGCAGTGTAAAAGCGT ATCATGCTACCAACCATATTGTCAATATCCTATGAGCATATATCGTTAGA TCGTAAGTGTCTTTGCAGGCCCACCAACAATCCAATCCAAACCAAACCAA ACTACAACAATCATCGCCGCTAACCAAAAAATTTCTTTTTATATGCCATA TATATATACCATGTCCATATAAACCCATACCCTGCCCAGCACCCTGTGAC TTATGAAGCCTTCGCCTTTCAGTGTCCAAGTACCAAACCGCCTACGCCTG CGAAGGTAAGAAACTGACCATCGAGTGCGATCCCGGCGATGTGATCAACC TCATTCGGGCCAACTATGGCCGCTTCTCGATTACCATCTGCAATGACCAC GGGAATGTGGAGTGGAGTGTTAACTGCATGTTTCCCAAGTCACTCAGCGT ACTGAACTCAAGATGTGCCCACAAGCAGAGCTGCGGCGTGTTGGCAGCCA CGAGCATGTTCGGGGATCCCTGTCCCGGTACCCACAAGTATCTGGAGGCA CACTACCAGTGCATAAGTGCAGCCCAAACTTCGACGACGACCAACAGGCC CAGTCCGCCGCCATGGGTGCTGAGCAATGGTCCGCCGATCTTTGGCAACG GCAGTGGACTGATCCATCCGCCCGGGGTTGGAGCGGGTGCGCCGCCCCCG CCGAGACTTCCCACACTTCCCGGAGTGGTGGGAATCAGTGGGAATCCCGG CCTGTTCAACGTACCACCGCAACACACCGCCGTCACGCACTCCACGCCCT CGAGCAGCACGACAGCCGTGGGCGGTGGACGTTTGAAGGGTGGGGCCACC TCCACGACGACCACCAAGCATCCGGCTGGCCGCCATGATGGTCTGCCACC GCCGCCGCAACTGCACCACCACCACAACCACCACGGTGAAGACACTGCCT CACCCACCAAGCCGAGCAGCAAGCTGCCGGCTGGCGGTAATGCCACTTCA CCATCCAACACGAGGATACTCACGGGCGTCGGAGGTTCCGGAACTGATGA CGGAACCCTACTGACCACAAAGAGCTCACCCAACCGCCCACCGGGCACTG CGGCCAGTGGATCCGTTGTCCCCGGGAACGGCAGCGTGGTGCGCACCATC AACAATATTAATTTGAACGCAGCCGGGATGTCCGGAGGCGATGATGAGTC CAAGTTGTTTTGCGGCCCCACTCATGCCCGCAATTTGTACTGGAACATGA CTCGAGTGGGTGATGTGAATGTTCAGCCCTGTCCTGGCGGAGCAGCCGGC ATCGCCAAGTGGCGTTGCGTTCTAATGAAGAGGATACCCGACTCCGGCTA CGATGAGTACGATGATGACATCAGTTCGACAACTCCGGCACCCAGCGGTG GCGACTGTCTGCACAACAGCAGCAGCTGCGAGCCGCCGGTGAGCATGGCC CACAAGGTAAACCAGCGTCTGCGCAACTTTGAGCCCACCTGGCATCCCGC GACACCTGATCTGACGCAATGCCGCAGCCTTTGGCTCAACAATCTGGAAA TGCGAGTAAACCAGCGGGACTCCTCCTTGATCTCCATCGCCAACGATATG TCCGAAGTGACCAGTAGCAAAACGCTCTACGGCGGCGACATGTTGGTCAC CACGAAGATTATCCAAACAGTGTCCGAGAAGATGATGCACGACAAGGAGA CCTTCCCGGATCAGCGACAGCGCGAGGCTATGATCATGGAGTTGTTGCAT TGTGTGGTCAAAACCGGCTCCAACCTGCTGGACGAATCGCAGCTGTCCTC GTGGTTGGATCTCAATCCGGAGGACCAAATGCGTGTAGCCACATCCTTGC TAACTGGCCTGGAATACAATGCCTTTCTGCTGGCGGATACGATCATCAGG GAGCGCAGCGTGGTGCAAAAAGTCAAAAATATATTGCTCTCCGTTCGAGT TCTGGAAACCAAGACTATCCAGTCCAGCGTGGTCTTCCCAGATTCGGATC AGTGGCCCTTGAGTTCGGATCGTATTGAGCTGCCACGAGCTGCTCTAATA GATAATAGTGAAGGCGGTCTGGTGCGAATTGTATTCGCCGCCTTCGATCG CCTGGAATCCATTCTAAAGCCCAGCTATGATCACTTCGATCTCAAGAGCT CCCGCAGTTACGTTCGCAATACAGCCATCCTGAGCAACGACAGCGATGTC AACGCGGGGGAGATCCAACAGCGCCTACGCATCCTGAACAGCAAGGTGAT CTCGGCCAGCTTGGGCAAGGGGCGTCACATACAACTCTCCCAGCCCATAA CCCTGACACTGAAACATCTGAAGACCGAGAATGTAACGAATCCCACCTGC GTGTTCTGGAACTATATTGACCATGCGTGGTCTGCCAACGGATGCAGTCT GGAGTCCACTAACCGCACGCACAGCGTCTGCAGTTGCAACCACCTGACAA ACTTTGCCATACTAATGGACGTTGTGGATGAGCACCAGCATTCGTTGTTC ACCATGTTCGATGGAAACATGCGCATATTCATCTACATAAGCATCGGCAT CTGCGTGGTCTTCATAGTTATCGCCCTGCTAACGCTGAAGCTGTTCAATG GGGTCTTTGTGAAGTCCGCGCGCACCTCGATCTATACCAGCATTTACCTT TGCCTCCTGGCCATCGAGCTGCTCTTTCTCCTGGGCATTGAACAGACCGA AACAAGCATTTTCTGCGGCTTCATTACTATTTTCCTACACTGTGCCATCC TATCGGGCACCGCCTGGTTCTGTTACGAAGCCTTCCATTCGTACTCAACG CTCACCTCGGACGAGCTCCTGCTGGAGGTGGACCAGACGCCCAAGGTGAA CTGCTACTACCTCTTGTCCTACGGACTGTCGCTGAGCGTGGTGGCCATCT CGCTGGTCATCGATCCCAGCACCTATACCCAAAACGATTATTGCGTGCTG ATGGAGGCGAATGCCTTGTTTTATGCCACCTTTGTAATACCAGTGCTTGT CTTCTTTGTGGCTGCCATTGGTTACACATTCCTCTCCTGGATTATAATGT GCCGCAAAAGTCGCACGGGTCTAAAGACCAAGGAACATACTCGCCTCGCT AGCGTGCGGTTCGACATACGCTGCTCCTTTGTGTTCCTCTTGCTGCTCAG CGCTGTTTGGTGCTCGGCCTACTTCTATTTGCGAGGAGCCAAAATGGACG ATGACACGGCTGATGTGTATGGATACTGCTTCATCTGCTTCAACACATTG CTGGGGCTCTATATCTTCGTGTTCCATTGCATTCAAAACGAAAAGATCCG GCGGGAGTATCGGAAGTATGTGAGACAGCACGCTTGGCTGCCCAAGTGCT TGCGCTGCTCGAAAACATCAATTTCCTCGGGCATTGTTACCGGCAATGGA CCCACAGCCGGAACCCTTTGCAGCGTCTCCACGTCCAAGAAGCCCAAGCT GCCGTTAGGAGTGAGCGAAGAGGCGCATGACGATCCCCAGCAGCAACAGC AGACACCAGTGCCCATCACAGAGGATGCCATTATGGGAGCCACCTCTGAT TGTGAACTGAACGAGGCCCAGCAAAGAAGAACCCTAAAAAGTGGCCTAAT GACGGGCACACTACAGGCTCCACCGCAGACCCTTGGTGGCCATGTTGTGC TCGAAAGAGGTAGCACTCTCCGCTCCACTGGTCATGCCTCACCCACCAGC TCTGCCGGGTCCACACACCTGATTTTTGCGCACAAGCAACAACAACAACA GCAGCAACAGGGACCTTTGGGCGAGTCTTACTACCATCAGCCGGACTACT ACAGCTGGAAGCAACCATCAACTGGAACAGGAGGATTGAAAACACCGCGG GAGTACTACAATAATGCGGGTGCTGCTGCATCATCGCCGCAACAGGCGCA CGAGGTATTCTACTGGACTCAAAAGCCGAACAGCGGCCACAATGGCAAAA AGAAGAGGGGCGCCGGAGGAGTTCCCGCCTCGCCTAGTGGATCTCTGCAC AGTCGCACGGCCGCCGCCTCCCAGGTGCTTTTCTATCCATCGTACAAGAA GACCAAGCCTGGCCAGCCAACAGGCTATCCGCAATACGCGGAGGCGTTGG ACCCACCACTAGCCACTGGCAATGCGGCTGCCTACTACCAGCAGCAGCAA CAGTTGCGTCGCCAGCAGCTACATCAGCAGCAGCAACAGCAGCAGCAGCA GCAACTCTCCTCGGACGAGGAGCAGGCCGAGCAACATGCTCACCTGTTGC ACCTGCAACGACGAGCTGGTAGCCAGCAGCAGCTCCCTGCTCCACCGCCA CACATGGCGCAGTACCAGCAGGAGTTTATGCAGCGCCAGTATAGAAATAA GCATTCCAACTGTGATCTGGGCATGGGCGATGCCTACTACAACCAAGGCA GCGTCGGCGGCGCGGATGGTGGGCCGGTCTACGAGGAGATCCTCAGCAAC CGCAACTCGGATGTGCAGCATTACGAGGTGGGTGACTTCGATGTGGACGA GGTGTACAACAATAGCGTTGGCACTGGCGTCTTCAACAACATGAGAGCGG CGGTGGCCGCCGGCGGTAGTCGGTACGGCGGCGGAAGCCTGAGTGGCGGC AGTGTCTCGTCCAGGAGCCAACAGCAGCAGCTCAAGAAGCAGCAGCAACA ACAGTCGCTGGCTCAGCAAAGATCGGCTCGACGCTGCACGGCGGATGACG ATGACGACGAAGACGAGGAGGAGGATGAGGAGGCAACGGCCGCGGAGCAA TTGCACGACAGCGTCTGTGATGAGGATGAGGAGGAGGACGAGAGCGACTT GGAGGATGATGCTCATGGATTGCCACCGCAGAGCGATGAGCGGATGCGTC GTCTGATGGCGATGCAGGACGAGGATTTTAAGCGGCGGTTTCAACGTCAG CTGCGCAAACATGGAGCGCCTCTTGACTACGGGGCTTTGCCACCAGGAGC AGGACCGCAACCCGAGCACAACGGTGCGGTTTTTGGGGTTAGCGGCGGCG TTGGTGAGGGCTCCCTGCGTGGCGCATTCCGGCAGCAGCAGCAGCAAGCA CTGAATGCCAAGTCGCCAGGCGGCCGTTTGGCGGTAAATGAGCTATTCGG TCACGGCAACTCGGGACCACCGCTGCCGCCGGCGAATCAGACGCCCGCGC AGAAGCGCCAGCAGCTACAGAAACTGTCACCACAGTCCACCACATCATCG TCGTCGCATACATCACACAGCAATCCCAATCCGCATCCCCACCAGCTAAC CCATCCGCATCCCCATCAGCATCCTCCGCACCATCAGCAGCGCCACCTGT CGGCCATGCTCGATGAGAACAACACGGTGCGATGTTATCTGGAACCACTG GCTAAGTGATCAGTTAACGCAACTCCCCCGGAACAGTCTTAGGCAAAAAT TGTAGCTTAGGATCTCTAGCTATACCTAGTATTAGTCGTTAGTCGAAATA TGGAGCATTGTGTGAAACAACATGCTGTCATGCTATACGTGCAGTGATTC GAAAATCCCAAAACTTTATAAATGTATATGAAATAACTAAAACCTAGACC ATAGGGCACATCCATACCCCTGCGGTGCCGTGCAAGCTTAACCAAAACTC GAGCGATGGGGGGTTGGAATTGGAATTGGAATCGGGCCCTTCGACTTGCA TGCATTTTATACCAACTTGGAAATCGATATTAAATATAAATGTATGTACC ATATATGTATGATGTATTGTAATACATGTCACCACATGCCATTTTTAAAT ACTTAAAAACTAATTTAAACAACCAGAAAATCAAGTATATATATATGGAT GTAGGTATATGTATAAGATCTAGGAACTGTATGTACATGATATATAGAAT TCAGGCGAATTATGTTTTATGTATTTTGTAAGAAATCAATTGTTTTTGAT TTACGCTGATTATGCTCGTAAGATATATATATATATACACACAGGCTTAA GATTTGTTTTGTGTTTCATAAACCAAAAAGATATCCTACGTTTTGAAAGA TTGTCATTTCTTGCTATCCAGCTGCCGTTTTCCACCTATACAACTAAAAT TCCTTCCAACTGCGAATCAAGAGGAATATAAGAAGTAAAGGGAAATAATA CATTGCCATTTTGTTGCTGCATTTCAGCTACGTTGTAAGCAAACCAGAGC GAAGCATTTGAAGTGTACATTTTCATCAATCTAGATGCTTTAAGCACACA CATAGGGGCATTTACTTTATATTTTTGAGATACAGAGAGAGAGAGAGCTC GCGAAATGCTTTATTATTTTACAAAACCGATACAGCATACGGAAATGAAA TACCTATATAGCAAAGAAAGATTTCAACCAAACCTCACTTGTTAACTAGG AACTAACTGAAAACTCTTTAAACACTAGCCAGCTGAAATCCAATCCTAAC ACTAAACTGTACTCTATTCCTACTCCCCGAATGGCATTCTCCCTAGAATT TCACGCATGTGTACAAAAACCAAATAAAATATAGTGCAAACAAGATGATT ACCATATATGTCGTACATACCAAGCCAAGGAAGCTCCGTGGGGGCAGCAG GCCCAGCTCGATCCCATTTGATCTGATCCGATTCGATCCGATCCGATCAG CAAGTTAAACTTGAACGAAACATTAGCACACAATCGATAAAGTTAGTAAC TAAGCACCCGCAGCATGCCACACATAAAGTGTCTAAATTGGTTCGGAAAT CGCGTGTTTGAAAGAGGAATACAGAATAGCAGATATTGAATGTATAGTGT TGCGCCTCCTAGAACTTTACTTATAAATAATAAAGCAGATTTATCAGATA CGAGTATATATGTGCGTGTATATTGACGATGCAAGCCATTGCAATCCCCC TCTTTTGTCGCCACATTCTCGCGAAATTGATTCTAGACCTAGGCATTGAA TTGATAAATCAGAGATTTTGAATAAAGCAGAAACCGAAACTGAAAACCAG ACGCCCAAATCAAAGTTCATAAAAAGCCCGATGAAAATGTTAATGTACAC AATTTTTTCTATTTAAGACAAAATACAAGAAATGGATTGCATTTTACTGT AAATG
Other Products of this Gene
Other Transcripts
	Name FlyBase ID Length (nt) Cirl-RB FBtr0290112 6940 Cirl-RE FBtr0301363 5860 Cirl-RF FBtr0305080 3610 Cirl-RG FBtr0305081 7571 Cirl-RI FBtr0310448 7631 Cirl-RJ FBtr0310449 4305 Cirl-RK FBtr0310450 4166
Polypeptides
Derived from THIS transcript	Name FlyBase ID Length (aa) Cirl-PH FBpp0293619 1643
Derived from OTHER transcripts	Name FlyBase ID Length (aa) Cirl-PB FBpp0288551 1643 Cirl-PE FBpp0290577 1639 Cirl-PF FBpp0293617 932 Cirl-PG FBpp0293618 1695 Cirl-PI FBpp0302596 1711 Cirl-PJ FBpp0302597 1000 Cirl-PK FBpp0302598 932
Comments
	Transcriptional initiation is supported by short-capped RNA data (FBrf0209722). Transcript terminates at site supported by polyadenylated cDNA.
External Crossreferences
	RefSeq - An integrated, non-redundant set of sequences • NM_001259276
Synonyms
	Cirl-RH
References ( 0 )
	No references are recorded in FlyBase at present.