Transcript Dmel\CASK-RH

General Information
Symbol	Dmel\CASK-RH	Species	D. melanogaster
Annotation Symbol	CG6703-RH	FlyBase ID	FBtr0330368
Feature type	mRNA	Associated gene	Dmel\CASK

Evidence Rank	Strongly Supported	Length (nt)	4128
Evidence Score	11

Map ( GBrowse )
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
cDNA Clones Consistent with the Transcript ( 56 )
cDNA Clones, Fully Sequenced
Exact Match
Contained within the annotated transcript, internally consistent	FI02017 RE09582
End(s) extend beyond the annotated transcript, internally consistent
cDNA Clones, End Sequence Only (ESTs)
Contained within the annotated transcript, internally consistent	28740 54147 60985 283422 CK01.30B.F10 CK01.85A.D7 CK01.102A.E11 CK01.103B.D4 CK01.103B.F4 CK01.120B.E10 CK01.123B.B12 CK01.123C.H11 CK01.133B.E11 Dmel_neb_012277_0822_1910 EC053546 EC053551 EC054031 EC054039 EC054528 EC055349 EC055930 EC056205 EC056452 EC056560 EC253395 EK085920 EK093932 EK093938 EK102018 EK136825 EK163661 EK179320 EK185759 EK308928 FGC001E11 FGH105A12 FGM232H12 GM15368 GM26591 HL01359 LD19143 LD46240 RE03045 RE03083 RE03767 RE06904 RE12239 RE39382 RE42388 RE48024 RH46561 RP004258890
End(s) extend beyond the annotated transcript, internally consistent	78667 EK206330
Sequence
	CGGTTCAGTTGCAACCAGTTCTTCGCCAATCAATTCCTCACGGGCCGTGT TTGTTTTAAGTTAAAATTAGTAAATTACCCAATGCAATCAGCTTGCCAGG CGATTCGTGCTGCGCACCTAGACAATCGAGTGCTAATGCGATTCGCTAAA ATGCCAAAAACCAGCGGCCGTTGAAGAATCGCTGCCAAATCGCGCAAAAT GCATTCTTAACATCAGCAGCTACGAAAACAGCAACAGCATTAGCGGCAAC AACGAATCAACGACACCAATAACAATACCATTAACAACAAATCATCAGAA GAAACCGAAGGAAAACGCTCAAAGTTTTGGAGTTGCTCACTGGCCGCTTA GTTTTTTGTTTATTTTTTATGTTCGTTTTTGGAGGGCAGTAGGCGACGAC GGGCAAAGGAAGCGGGAGAAGGAAAAGCGACGGACACGAAAAACAGGACA CAACTCATCAATATTCGAAAAAGCAATTGAGTCGAGGCATCAATTCATCA ATTATTCAAAATGACCGAAGACGAAATTCTCTTTGACGACGTCTACGAGC TGTGCGAGGTCATTGGCAAAGGACCTTTCTCCATCGTAAGGCGATGCATA CACAGGGAGTCCAATCAGCAGTTTGCCGTCAAAATCGTTGATGTGGCCAA GTTCACAGCGAGTCCTGGACTGAGCACAGCGGATCTGAAGCGCGAGGCCA CAATATGTCACATGTTAAAGCATCCGCACATTGTAGAGCTGCTGGAGACG TACAGTTCCGAGGGAATGCTCTACATGGTCTTCGAGTTCATGGAGGGCTC CGACTTGTGCTTCGAGGTTGTGCGGCGTGCTGTTGCCGGTTTTGTCTACA GCGAGGCGGTTGCTTGTCACTATATGCGACAAATCCTGGAGGCACTGCGC TATTGTCACGAGAACGACATCCTGCACAGGGATGTTCGTCCCGCCTGCGC TCTCCTCGCCACCGTCGACAACTCGGCGCCGGTGAAACTTGGCGGCTTCG GATCGGCCATTCAGTTGCCCGGCACCCGGGAAACCATAGAAACACACGGA CGGGTAGGATGTCCGCATTATATGGCGCCAGAGGTGGTGACCAGGCGGCT TTACGGCAAAGGCTGCGATGTGTGGGGTGCCGGAGTGATGCTGCACGTCC TGCTCTCGGGCAGATTGCCCTTCCTGGGATCCGGAGTGAGGTTGCAGCAG TCAGTAGCTCGCGGTCGGTTATCGTTTGAAGCACCGGAGTGGAAATCAAT CTCGGCGAACGCCAAGGACTTAGTCATGAAAATGCTGGCCGCCAATCCAC ATCACAGACTCTCCATAACCGAGGTGCTGGATCATCCATGGATACGGGAT CGGGACAAACTACAGCGCACTCACCTAGCGGACACGGTGGAGGAATTGAA ACGCTACAATGCCCGGCGCAAGCTAAAGGGTGCTGTTCAGGCCATCGCAG GAGGCACCAACATGGATCCACTATACGCCACCGATGCGGACATGCCCATA ACCGGCGCCACGGACGAATGGGCCGACGAGGAGGCGGGCATTGAGGCAGT GCAGCGCATCTTGGACTGTCTGGATGACATATATTCGCTGCAGGACGCAC ACGTTGACGCCGATGTGCTGCGGGATATGCTGCGCGACAACAGGCTGCAC CAGTTTCTGCAGCTGTTCGACAGGATCGCGGCGACAGTGGTGACCAGCAA TGGTAGAGCACCGGCTGCCGAGGCCGTAGGCCGATGTCGCGATGTCCTGG AGCAGCTCTCATCGACGTCCGGCGGCAACTCACTGGGCGGCAAGTATGCC AAGGAGGAGCTGATGCGGCTACTGGCCGCCCCCCACATGCAGGCTCTGCT CCATAGCCACGATGTGGTGGCCCGGGATGTCTACGGGGAGGAGGCGCTGC GCGTCACCCCGCCCCCGATGGTGCCCTACCTCAATGGCGACGAGCTGGAC AACGTCGAGGGCGGCGAACTGCAGCATGTGACCCGGGTGCGACTGGTGCA GTTTCAGAAGAACACGGACGAGCCCATGGGCATCACGCTGAAGATGACCG AGGACGGGCGGTGCATTGTGGCCAGGATTATGCACGGCGGGATGATTCAT CGCCAGGCCACGCTGCACGTGGGCGACGAGATACGGGAGATCAACGGCCA GCCGGTGCAGCACCAGTCGGTTGGCCAATTGCAACGAATGCTGCGCGAGG CACGCGGTTCTGTTACCTTCAAGATAGTTCCTTCGTACCGCAGCGCTCCG CCCCCCTGCGAGATATTCGTGCGCGCCCAATTCGATTATAATCCGCTGGA TGATGAGCTTATACCCTGCGCCCAGGCGGGCATATCGTTCCAAGTGGGCG ATATACTGCAGATTATTAGCAAGGACGATCATCACTGGTGGCAGGCGCGA CTGGACACGGTGGGCGGATCGGCCGGACTGATACCGTCGCCGGAGCTGCA GGAGTGGCGGATCGCCTGCCAGACGGTCGACAAGACCAAGCAGGAGCAGG TTAACTGCTCCATCTTCGGGCGCAAGAAGAAGCAATGCCGGGACAAATAT CTGGCCAAGCACAATGCCATCTTCGACACGCTCGATGTGGTCACGTACGA GGAGGTTGTCAAGGTGCCAGTTGGCGACCCGAACTTTCAGCGCAAAACGT TGGTGCTCTTGGGTGCTCATGGGGTGGGCAGGCGGCACATTAAGAACACC TTGATATCGAAGTACCCCGACAAGTACGCCTATCCCATACCACATACAAC GAGACCTGCCAAACCCGAGGAGGAGAACGGACGCAGCTATTACTTTGTCT CGCACGATGAAATGATGGCGGACATCGGTGCGAATGAGTACTTGGAATAC GGCACCCACGAGGATGCCATGTACGGCACCAAGTTGGACACCATCCGACG GATTCACACCGAGGGCAAGATGGCCATATTGGATGTGGAGCCGCAGGCAC TAAAAATACTCCGCACCGCCGAGTTCACGCCCTATGTCGTGTTTATAGCG GCGCCCTCACTGCAGAACATAGCAGATTACGACGGCAGCCTGGAGCGACT GGCCAAGGAGTCGGAGATGCTGCGCCAGCTATACGGTCACTTCTTCGATC TGACGATTGTGAACAACGATATTAGCGAGACGATTGCCACGCTGGAGACG GCCATCGACCGGGTGCATACCACCCCGCAGTGGGTGCCCGTATCCTGGCT GTACTGACAAGACAGCGAACTGGAATGCCCCGACTGCCTCGAGGGCTGTG AATGCGAGTGGGAAGCCTACACACAGGCCTCCAACGTAGCCCTATACTGA GGCACAGATGCAGATGCGCACGACGATGCAGATACACGCCACATCACCAC ACCACACACACCATTAAAGTATTACCAAGGCACAAGCAACAGCAACTGAA GAAGCAACACAGCAACCACTACGAGAGATGACAGTCAGGACTGGAGGATA GAAGGCGCCTGGCGCCGAGCTATATAATTTAAGAATAAATGGGTATTATG GGAACTGCGGTCGCAACGCAATGACAAAAGTGTGTGTTAAACGACAAACA ACCATTTGTATTTGCCTCTTATTTGTTTTCTGTTTTAACAGTATGTTTAT TTTGTATTAATTTTAATCGATTGTATTTGCCATTCCATGCTCAATGTGTT ATATTTTACGATTATTGTTTTGTTGTATTTGTTTTATTCAGCATTTAGTC AAAACAGCATTAAACGCTTATGTAAATCTTGCACTTGTTAGTGTCTAAGT TAAATGGAGTTAGACAAATCGAAACTGAAGCACTCCAAATTGTTTTTACC TAATGATTATTTCCGGTAAGAGTCTTGTGTGCAGGTAGGGCGTCGAACGA GTTAGTAAATTATAGAAAAACTACGTAATTAAATATAATTAAACATAGAC ACAAGGAGACACAACAGCAAAAAGAACACGAAGAACAGAAAAAATAAACA AATTACGATGTGAGCAATTTCAAGTGTTTCAAGCCAAGTAAGAACTAATT AATAACATATGGAAAATCAACTGAAGACAGTGGTGACGCAAAGTGCACGT TTTAAATGCAATAAAAAGGAAGGTAACAGAAAAACAAAAAATAAAATTAA TTCAGATCACAACACTTACACACGGAGG
Other Products of this Gene
Other Transcripts
	Name FlyBase ID Length (nt) CASK-RA FBtr0084162 4112 CASK-RB FBtr0084161 4128 CASK-RD FBtr0112872 4017 CASK-RE FBtr0112873 2586 CASK-RF FBtr0301327 6544 CASK-RG FBtr0301328 4071
Polypeptides
Derived from THIS transcript	Name FlyBase ID Length (aa) CASK-PH FBpp0303394 929
Derived from OTHER transcripts	Name FlyBase ID Length (aa) CASK-PA FBpp0083560 591 CASK-PB FBpp0083559 898 CASK-PD FBpp0111785 591 CASK-PE FBpp0111786 469 CASK-PF FBpp0290542 916 CASK-PG FBpp0290543 609
Comments
	Stop-codon suppression (UGA) postulated; reflected in aa sequence of predicted polypeptide. Transcript terminates at site supported by polyadenylated cDNA.
External Crossreferences
	RefSeq - An integrated, non-redundant set of sequences • NM_001275882
Synonyms
	CASK-RH
References ( 1 )
FlyBase analysis	FlyBase Genome Annotators, 2004, Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. [FBrf0166453]