Transcript Dmel\cp309-RG

General Information
Symbol	Dmel\cp309-RG	Species	D. melanogaster
Annotation Symbol	CG33957-RG	FlyBase ID	FBtr0333939
Feature type	mRNA	Associated gene	Dmel\cp309

Evidence Rank	Weakly Supported	Length (nt)	9335
Evidence Score	3

Map ( GBrowse )
Recent Updates
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
cDNA Clones Consistent with the Transcript ( 27 )
cDNA Clones, Fully Sequenced
Exact Match
Contained within the annotated transcript, internally consistent
End(s) extend beyond the annotated transcript, internally consistent
cDNA Clones, End Sequence Only (ESTs)
Contained within the annotated transcript, internally consistent	36801 52349 60661 73986 107080 120459 121940 542607 561842 CK01.63C.H7 EC052285 EC052824 EC053809 EC054269 EC055170 EK051332 EK148017 EK167116 EK185758 EK229905 EK242327 EK245252 EK265801 EN10943 EN13233 LD22031 LP06045
End(s) extend beyond the annotated transcript, internally consistent
Sequence
	TCCGCACATTTATAGCTCTATAAAGATAAGAGTGCAGTGTCAGTGCCTGT GATCCCATAAAATTGTTTAAAAAAATCTACGAAACATTTGCATATACGTA GAAGTTTGCACAATGTAACCCTCAATAGCCATTGTCGATATATGGACTTT TTAAGTGATTGTAAATTGCATTTAATTGAGATAACTTCTTCATCGCTGAA TTGAATCGAATGAGTGGCGGGCAGCGAAATGGGGAAATTGCATATCACAT CATTGCTCCGGCCGCACGGTGCCAGTGTAAGCTATAAGGCGATCGAAGCG GCGACTCTCGAAGAATTGCCAGCAACATCCGTGGCAACAGCAACATCCAC GGCTGCAACATCACGCGCCACTGGAGGAGCAGCAGCAACTTGTGTGGACG TTGAGTTCATACCCACGCTAAATATCATATTTGAGAAGCCGACTTCGTCG AGTGAGCAACTACAGTGCGCCGAGAAATCGGAACATGTGGCCGGTGGTGT GTCCGATAAGGAACCAGCAGATGATTGTGACTCCGACAATGATTCTACGC GCACATATATAATCTCGCGAAGCAGTTGGACGGGGGTAACATCGAGTAGC AGCACCCCATATGCGGTTACATCCACGGATACCGCCGAATTACTCAGGCG CCAGAACAATCTCAGCCTTACGGAGGAAGATCAATCTGTGTCGTCGTTTA GCATCGAGCAGCCCACCAGTTCCATAACCATTGAAATGGCCGATCAACGG ACAACCACGACCACCACAACAACGGCGACGACGGCAACAACGCCGAGCAG TGCTAACATTCTGGCCACAACAGCAACGACAACGACCACAACTAGCAGTA GTATTGAGGAGGAGATCGAAGAGGCCATCGAGATCAGTGAGGTGGAGGAG CAGCTAAATACTCCACTGGAATCTCTATCGGAGGCGGCTGCCTATGCCCG GCCAAAGGATGAGCAATCAAGTGCCAAAAGTTTGAGTAGCAATCCGGCAG AGGATGAGGATGCTGATGAGTTTCGGATCGATGATGCCCAGTTATCTGGT GGCCAGTTGGCTCAGCACTTCCTGGTCGATGAGGATGAAAGCGAGGAGGG TTCGGATCTTCCAGCTGCCTCCAAAGTGGAGGTTAGTCTCTCCTCTAATG ATGATGACTTTGATATCAGTTTGCCATTGGAGCAGAGGAAACCTGTGCAT TCCCTGCACGAAGATGATGAGTCTGTAGATCAAAGTTTAAGTAATCAAAG CACTACGGATGATGTTTCCGAATTGGTCGAGGAGCCAGTCCATGAGATGG ACGATAAAACCGATGGCAGTGCGGCCATTAGTGCCAGTGCACCTCAAGAA ACTCAGGTGGATGAAAGCCAAATAACCGACGAGCAGGATCACTCTATGGA AGAAATAGTTGCCACAAATGAATCAATTGAGGTGACGTACGAAGCTGAGG AAACCGTCAATACTTCACAGAAACAAGATTTAATCACCGATTTAGATGAA GAGTCAGAGGATCAGGTGCACGTGGACAACAGGCCCACTTCGACTTTGCA AGCATTGAAGCTTCCTGCGTTGCAACAACCTCAGATTGTAGAAAGGAAAG CTGCTACAGCATTGACCACATTACGTCTGCAAGCAGATGTTTTGGAGCCC TTAGAGTTAACCATTCTGGAAATGGATGATGATGAGAATGAAGAGGATGA CGACGATGAGGAGAGTTCCTTGCAACTGATGAAGCTGCGATTAATGGCCA TGAATCAGCAAATGATTGTGGACAATGCACCCAAACTTTCGCCCACGGAA GCGGAACAAACACAAGTAACCAGCAGCAGTAACAATTTAGAAATCAAACA AATGGAGCGAGTGCCACTCACAGAGTTCTCCAAGGATGTTCTGGAGGATA TTACCGAAGAAAGCGAGAGACTTCTCTCGATGAGCACAACTATGGAAGAG GAGCAGGATCCGCCTTCCCTCTCCTTGGATGAGTCTAAAACTCTGCTGCA GCCAGGAGCACATAAAACTGGGGGCAGCAGTTCCAGTTTGGTGAGTTTAA ATATGCTTAAGCAGCTGGAGGCCAAGGTACAGGAACTACACACCCAACTG GAGACCAAGGACAACTGCTTGGCATCGCTTAATCTGCAGCTTGAGACAGC AAGAAGAGAATCCAGTGCGGGTCCAGCTTCAGCAAGGGATTCCAGTTCGC TAATGACCAATTCGACAGAGTATCGCACTCTTCAGGAAGAACTAGGCGGC CCAACATTGGACATTTATGTGGAGATGTCACGGAGGGATGAGTTGATTGC CAAACTAACCGATTCGCTGCAGCAATCGCTGAATGTGCGTGACAAGCTGC AGGTGGATGCGGATCGTCTGGGTGGCGAAGTACAGAATCTGCGTAGGCAA CTCCAAGAGACGCTCGATGCAGTGAAACGCTCGAGTGCCGTATGGCCCGA TCAGGAATGCAATCCCGGTCAGCGTATCTCAGAGATCTCCATGGATTTGA TCAGCGAAAGCGATGATGATCTGGATCGTCATTTTCTCACGGACAACGAA GAGCGCGGATCACGCAGCTCCAAGGAAAGGCAGCTAACTCAGTTACAAAC CAACGAAGAATTGGGACTGCAGGCGTCAAACCCGGAGTGGACACCGACAT TTAGCAAGCAGATCGAACAGTTCCACACATATCTGTTGCCCACCGAACAG CGCATCTTCCAGATGGTCCAGCGCAAGTTCGACGACTATTTGAACCAACA GATCACCTTGTGTCGTGATCTTGGCGCCCAGGAGCTGAAGATTGCCCGCG ATCAGTGGGAGAGCGAGAAGCTAACCAGCGAACAGAACCAGCAGGCAGCT CATGCCAAGCAAATGGAGGATCTGCGCAAGTACTTTGAGCATAAGTGCGC CGATCTGGAAAAGCAATTCTCGGACGATGTCTTCTCGCACAAGTCACAGC ATCAGACAGGGGACAGTTCATCGGAGTGCTCGGAGGTAGATCAGTTGCCC GAGGAAGGGGCCGCCGCGGTGTCCTCCAAGGAACCATCTCCCCGCAAACG GAAGCGAGCTGAGCTGCTTCTGAGTCCCAGTCACAGGCAGATGACTCCTT GTGGCTTGGATTCGCTGGGAGAAAACACTGGAAAAACTGAAAAAGACAAT ACTGCGGATATAGCCGACCTAAAGATCTTTTACCAAACCCACATCAAGGA GCTAAAGCGCGCGCATGAGGATCAGGTGCGCAAGCTGAGCGATCGGATAA AGTTCTATGAGCGACAGCAGGGTGATGATGACTATAAGCCTGCAACCGAA TCACCCGAACGTACCTGCCCGGATCAGGAATCCGCAGGGGGAGTCGCGAA TACCTCCCTTATTATCATCGATGAGGATGAGTTGAATTTCAACAACGAAT CGCAGGTTATTCAGCGAATCATCGAGGAGTACGAGAAGAGATTGCAGGAG CAATTGGCCTTGGCTCGGCAGGACATCGCCACCGAGTTGGAGCAGCAGAT TAAGAGTTTATTGTCGGAGAATACCGTGGACGATCAGCATTGGCCCAAGG AGCTGATCTTGCTGCGCGAGAAGTTTACGGCCAAGAGTCAACTGGAGATC ACTCAGCTGAACATTAAACATGCCGAAGAGATGTCGCGCCTGAAATTAGA ATTTGAAAAGCAGCTGAATCGAAAGAACAAGCGCCATCTGACCTTCGATG CAGCCCGTGACCTGGAGCAGGTGATCTGCGAACGAGATGGATTGAGGGAG CTGTCCAAGAGTTTCCGCAGCGTACTTTGTCGGCTGGCCAAGTGTGTGGC CCACTGTGAGGAGGATTTGAATGCCACACTATCCGAGGAGGTGCAACGCC TGCTGTTCCACAGTCGCAGTCAAGATGGAGGTGATGATCTGGAGGCTACC ATTAGTAGCTCCCTAAATAATACGAAGCACATGCTCCGTGTGCCGGATGT CCACAGCCTGCTGGAAGTTGTGGAGGATCCGAGTTTGGTGCAGTTCATCG ACAGCAAGAGCAACGAAGAGCCAAGTGAGGACTTCGATTTGAATGATTGC CTAGAGCGTTTGAAGTCGGAAGCCTCCTACCTGTTGCATTTGTCAGAGGA TTTGCATAAGCAGCGGACACACGATGAGTCGTCGGAGCACTTGGACGAAC CGGAAAAACAGGAGCATGAGCTCTGCTGCGAGGCGGAAGATGGTCTGAAG ACCACAGGTGCAGTGAATCAACAAGTACTGTCGAAATTCCTGCGCACAAA TTCCTTGAACGATCAGCAAATGGGCGTGGCCAATCAGAGGAAGAACAGCA ATCCCGAGGCGGGAAAAACACATTCCTCCCTACCTCCAGATCTTCAAGAG CATGCGGGAAATGCATCAGAGCTGTCGTTCCAGCTTGTGCAGCTAAAGAA TCGCTTGATTAAATCGGAGGCAGATCGTCAGAACTTGCAACAGCAACTCA GTCGCACTATTGATCGCAATGCGGAGCTGGGACAGGAGCTACAAGCACTT AGGGATCAGCTCTCCCAGTTGAACTCTCTGAACCACACGGATTACAATGA GGGATACGGCTTGGGCACAATGAAGAGCTTGCAGGAGCAGGGATTGGATC AATCATCGGCCAGTTTTCTTGCCCTCCAAGAGAGAGCGCGTCATTTGCTT TCATCCTCTCCGGTCAAGGAGCAACCATCAAGAGACCACGGCAATTCGAC CGTTATCTTGCTACAAATGATCGAGGACTTTTGCCGCGAGGGCGACAAAG TGGTGGAGTTCAGCAAAAAGGATCGCGAGGATCTGCAGTCCCAGATCGAT ACCGCTGACAAGCAGCTGAAGGATACCAGGCGATTCCTGGAGGATCAGGC CGCCGAACGCGAACAGGAACGCGATGAGTTCCAGCGCGAAATCGAGCGGC TGAAGGCTCAGTTGCGCGACAAAGAGAAGGAGCACAGCTCCTATGCCAAT GCCTCCGAGGAGTATGCACAACTGGAAAGCCAATTTAGGGAGGTAAATCA ACAGTTGTGCGAGTCGAATGCGAAGCGGGATAAATTCGAGGTGGAACTGA AGGCTTCAATTGACAAAATCTTCGTGCTGCGGGAGATCATCTCAGAGCTG GAAACCCAAGTCCAGACAAAGGCACTCAATGAGGAAGTTTTGGCCGAGAA GGCCCAACAACTGGAGGAATATGTGAGTTTGCAGATGCGGGACAACGATA TACTGCAGCAGGAGGTGCACAGCCTGAAGACAGACATTGGAGAGGGCTAT CAATCCCGTATCAGAGTGCTGGAGGAGAAACTGAAACAGAGTGGACCAAC GGCAGAACAAGGTGTGGTCTTGAGTCAGGTTGCGGAAAAGTTAAGAGACA TTGAAACCACACTGGATCAAAAAACCAAAGCTCTGGAATCTCTGCATAAC TCCAACGCGACCTCCAATTCGGCCAGCTTGAGTGTCACCGAAGATGTGTC TATTCATGGCAGCAAGGAACCCACGGCAGTGGGTTCACCCTCGCATCCAT CGCTCACCGTGGAAGGTGTTCAACGGGTTACCGAAAAGCTGGACCGGCAC ACTCGCGTCGAGGAGGCGGCCATTAAGAGGATTCGCGACCTGGAGATGCA GGTTCATCAAATGCGCGCCGGTTGCGTGGAGCTTCAACATGAGCGGGATA CGCTGCAGGGTCGTATGGAGGAACAGACTCAGCGTATTTCTACCCTCCAA AATCGGCTGGAGGAGCAGCGACAGCGGGCGGAGCAACTCCATCGGACTGG CACATCAGACTTGAATACCCGAGTACATGAACTCCAGGGTGAGGTCCAGA ACCTATACGAGCAATTGGCGGCGCGGGACAAGCAGATGGCCAACATGCGA CAGCAACTGCAGCGCAGCAAGGAGGAGATAACTCGACTGGAGACGGAAGT CGAAGTACGAACACAACCAGATCGCAGTCTGGTGAACAAACTGCAGGCTG AAGTGCAGCAAAAGGGAGCAGAGATCGTGAAGTTAAAGGATAAGATACGC ACAGAGATGATCAACCGTCTGGCTATCCCGGATCTCATGGAGACTATGCT GGCGGACAAGAACGATGAGATAGATCACCTGCGCGATCAACTGGAGGCTA AGGAGAAGGAACTGCAGGCATCTCAACAGGAAGCTAGCCAGATTTCATCC CCGTCTGGAGCAGCAGGAAAGCAGGAGGGTAGCGGTGGCAAGTTGAGTGC CCGAACCCTAAGCGATATCGGATCGATTACAGAGTTCCCCGAGCCGGATG TGGAGCGTCGAGCGGCCATGCGAAGTCTTACCGCTTTACAGATGAGCGAA GGTGCGGGCGGCTTCCTGCACCAGACAATGGAAACTTCTAAGGAAGCCGT GGCTAACTTAACACACAAGCGCACCGATGACCTAAGCGGCTTTATTGTCC CTTACCCGGTTAACACTTTCGAGCATCCGCACTACTTCCAGGCCCTGGGA GTCACTGCACAGAGCACCGATGGTCTAACGCCTGGTCTGGTGCCGAGGCA GATCAACTTCTCCAACCTTACAGAGGATTCCAAGCTAAAGACGACCAGTC TTCTGATGCACACACCGGAGTTGCCCAGGCCAACAACTCCTCCAGAGATT CATCAGCTGCGAGTAAAGCTTTCCGATTTGCAAACCGAAAAACAGAGACA GCAGAGTGAATTGGAGAAGAAGTTACAGGATCTGCAAAAAGAACTAGAGC AGGAGAAGGAGAAGCTGAGTCGTCAAGCGCAAACTTTGCAAAGTTACGAG GAGAGTGAAGCTAAGTATAGGCTTCGCATAGAGAACCTGGAGTCCAAGGT GCTGGAAACAGCTGCCCAGGCGGCTTCTGATCGAGAAAATCTCCGTAAGG AACTGAATTGCGTTAGTGCGGCCCATGAACAATGTGAAAATGCAGCTGCT GCTCGCAAACGGGAATTGGAGAAACTGAATAGTGAAGTCAAGGTAAAGGC CGATCAGCTGCATGCTGCTTTACGACGATGTGCAGATCTCGAACTGCAGG TTCTAACACTAGAACGCGATTTGGAGCGCCTAAAGAACAGTGATAATAGT TCGAAGCAATATTCGGTGGACGAAATTGCCCAGCAGGTGGAAAAGGAATT AAACTACTCTGCTCAGCTGGATTCAAACATCCTTAAAGCAATTGAAAGCG AGGAGGAAAACAATCTGGACAAGAAGCTGCAGAAAGGTGTCCAAACGGAG GAGGAGACTTTACCTGGAACTGGCAATGGAACCGACGACGAGAACTTCAC TGGCGAGCGGGAACTACTAAATCAGTTGGAAGCCCTGCGTGCTCAATTGG CCGTGGAGCGTGAGCAATGCGAAGCAATGAGCAAGGAGCTACTGGGAGAG AAACAGCATTCGCAGGATATTCAAGAGCAGGATGTGATTATCATAGAAGC CATGAGGAAACGACTGGAGACAGCTCTTGATGCCGAGGACGAGCTCCACA AACAGCTCGATCAGGAACGGGAACGTTGTGAGCGTCTTCAAACGCAATTG ACATCGCTGCAACGAGCGGAAAGTAGAAGAAACAGTTCCCTGCTACTGAA GTCGCCGGGCGACTCGCCCAGGAAATCTCCACGGGCTGATTTTGAATCCG AACTCGGAGATCGTCTGCGCAGTGAGATTAAACTGCTGGTTGCTCAAAAT GAAAGGGAACGGGAGAGATCTGCGGATGCTCAACGGAGCAGTGAGCGGGA ACGTCAGCGGTATGAAAAAGAGCTCCAGGAGCGAGTGGCATACTGTGAGC GGCTGAAACAGGAAATGGAGAAGCTATCTCGGGATAAGGAGTCCGCCGAA ACAGAGTTGGAACACTTCAATGAACGTTTAACCCTGCAAGCCAGTGAAAT CGAAAGTTTGGAGGCTAGGTTAGTCACCCTCCAGGAGGCGGAAACGCGAA GGGCCAACACACGCACCCGTCAGCATCAGGAGAACGTCAAGCTCCAGGCC GAGATCCATGAACTAAAGTCCAAACTTCTGGCGGCCGAAGCAGCACGGGA TTGCCTGGACCAAAAAGTCACCCAACTGCGTTTCGATGTGAGTCGTTCTG GTCAGAGGGAGGCCAAACTAGCTGAGGCCTTAGCTCAGGCCAATGATCGA TTGGCTCATAGCACCGATGACAATGTGCCGGCGCAGTTCATGCAGAAGAT GAAGGAGATCAACGCCCTGCTGGCGGAGAACACTCAGGAAAACCGGCAAA TGGCTGAGACGGTCCAGTTTTTGGTGGGCGAACGTATTGCTCTGCAGAAG AAATGCGAAGAGTTGGGTGGAGCTGGTAACACCAATGTCACCGAGCTGGA GGAGCGCTGCCGGCAGTTGATCGGTCGCTATTTACGAGTGGAGTCCCATC GGAAGGCGCTGGTCTACCAGAAGAGGTATTTGAAGCTCACACTGGAAGGT TACCAGGCCAGTGAGCAATTGGCTCTGCAGAATCTGAGAGGTGGTGCTGA ACAGCCTCCACAGCGAAACATCAAAAAGAAGTTTAAGACGGTAGCCCTTG CGATCATTGCCATCCAGCGAATTAAATACATTGGACGCATCTGGCACACG GGAAAGCGGATTGTTAGCAAGTCAGTCTTCACAATTACTCAGCAGAGAAG TCCTGGACTAAACCTCAATGTGGCGCCTCCCCAATCCCCACTGCCTGGAC CCAACTCAAATCTACCCACCAATAACAACAACCTCATGGGCCGCCTTAGT TATGCGCCCCTCTCACCGCCAATGGTTAACTTCAGCACCGTGCAGCCAAT AATGCTGCCATCGGATTTCACCCTTCAAGCGCCAACAACTTCGTTGCAGA CCACCATTGCCAATAACAATAGCGAAAACACCCTGCCATCATTGGCAAGA TTGGACTGGCCGACGATGCAAAAACCAAAAAGAGCGCATGCGCGGCATCA TTAAGCCCAGGATAGCAGAGTTGAGTTCCATCAAGAAGAACTTAACTGAA TGCCCTAACTTTAAGTGAAGCCATATCGAAGACACTCTGCAAGCATGAAA GCATCAAGGATGTTGGACAAGCGATCCATTTTAGAGTTAATCACCTGTAC CATTTCCCCTCATTATTAGATCTTAAGCTGTTGTAACCTATTTTAAGCGT TCGCGCAACCACAACAAACCTAGAAATGTAATCGTCTGTAAGTGTTATTT GTATTTACCGCCCAAATGTAGCCATAAGCATAATGCTAATCCATGTCCCA GTATTTTGATTGGTTCGACTGACTATTGGCTGACAAATCCCAGAGTCACT TACATATATTTAGTTTTATTTCATTTGGGTTCTGACTGTATAAGTTTCCT GCTAAGTTGATTAAACCAAATTTATTTCACATTCG
Other Products of this Gene
Other Transcripts
	Name FlyBase ID Length (nt) cp309-RC FBtr0099993 3879 cp309-RD FBtr0305977 9110 cp309-RF FBtr0305979 9494 cp309-RH FBtr0333940 6175 cp309-RJ FBtr0333941 9281 cp309-RK FBtr0333942 9302 cp309-RL FBtr0333943 9326 cp309-RM FBtr0333944 9065 cp309-RN FBtr0333945 9233 cp309-RO FBtr0333946 6007 cp309-RP FBtr0333947 9473
Polypeptides
Derived from THIS transcript	Name FlyBase ID Length (aa) cp309-PG FBpp0306064 2891
Derived from OTHER transcripts	Name FlyBase ID Length (aa) cp309-PC FBpp0099787 1109 cp309-PD FBpp0297119 2767 cp309-PF FBpp0297121 2895 cp309-PH FBpp0306065 1757 cp309-PJ FBpp0306066 2666 cp309-PK FBpp0306067 2831 cp309-PL FBpp0306068 2839 cp309-PM FBpp0306069 2594 cp309-PN FBpp0306070 2650 cp309-PO FBpp0306071 1701 cp309-PP FBpp0306072 2730
Comments
	5' non-coding exons overlap with CG6945.
External Crossreferences
	RefSeq - An integrated, non-redundant set of sequences • NM_001274930
Synonyms
	cp309-RG
References ( 1 )
FlyBase analysis	FlyBase Genome Annotators, 2004, Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. [FBrf0166453]