Transcript Dmel\cp309-RL

General Information
Symbol	Dmel\cp309-RL	Species	D. melanogaster
Annotation Symbol	CG33957-RL	FlyBase ID	FBtr0333943
Feature type	mRNA	Associated gene	Dmel\cp309

Evidence Rank	Weakly Supported	Length (nt)	9326
Evidence Score	3

Map ( GBrowse )
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
cDNA Clones Consistent with the Transcript ( 29 )
cDNA Clones, Fully Sequenced
Exact Match
Contained within the annotated transcript, internally consistent
End(s) extend beyond the annotated transcript, internally consistent
cDNA Clones, End Sequence Only (ESTs)
Contained within the annotated transcript, internally consistent	36801 52349 60661 73986 107080 120459 121940 542607 561842 CK01.63C.H7 EC052285 EC052824 EC053809 EC054269 EC055170 EK051332 EK148017 EK167116 EK170852 EK185758 EK229905 EK242327 EK245252 EK265801 EN10943 EN13233 LD22031 LP06045
End(s) extend beyond the annotated transcript, internally consistent	53504
Sequence
	TCGAGGAGCATTGAAAATCACATAATGATAAATTAAGAGTTCACGCTTTA AGTAGCTAGTTTCCCCCATTGTGTTGTCTTCGTGTTAAACTTTAAATTAA AAAAATATCAAATTTTACGTAAAGTCTCCAACCTAACCTACAAAATTATT CGGTTCGTTGCATTCGTCTGTGTTTGTAAGCAAGTCAACCCGAAAAAATT CTAAAATATAGTGTCATCAAAACCACTACGTAAAAACATCAACAAGAAAA TGGATCGCATTTGGGCCACATCTAGAATGCCTATAGATATAGCCAACTGA CAGGCGCAAGTGTCAACAAAGGCGGCCAAAAAACAGGGAATAGGCCATAA ATTATTTGGTTCAAGTGCAGTCACCATGAATCTGTACACTATATACGATT GGATCACATCATTGCTCCGGCCGCACGGTGCCAGTGTAAGCTATAAGGCG ATCGAAGCGGCGACTCTCGAAGAATTGCCAGCAACATCCGTGGCAACAGC AACATCCACGGCTGCAACATCACGCGCCACTGGAGGAGCAGCAGCAACTT GTGTGGACGTTGAGTTCATACCCACGCTAAATATCATATTTGAGAAGCCG ACTTCGTCGAGTGAGCAACTACAGTGCGCCGAGAAATCGGAACATGTGGC CGGTGGTGTGTCCGATAAGGAACCAGCAGATGATTGTGACTCCGACAATG ATTCTACGCGCACATATATAATCTCGCGAAGCAGTTGGACGGGGGTAACA TCGAGTAGCAGCACCCCATATGCGGTTACATCCACGGATACCGCCGAATT ACTCAGGCGCCAGAACAATCTCAGCCTTACGGAGGAAGATCAATCTGTGT CGTCGTTTAGCATCGAGCAGCCCACCAGTTCCATAACCATTGAAATGGCC GATCAACGGACAACCACGACCACCACAACAACGGCGACGACGGCAACAAC GCCGAGCAGTGCTAACATTCTGGCCACAACAGCAACGACAACGACCACAA CTAGCAGTAGTATTGAGGAGGAGATCGAAGAGGCCATCGAGATCAGTGAG GTGGAGGAGCAGCTAAATACTCCACTGGAATCTCTATCGGAGGCGGCTGC CTATGCCCGGCCAAAGGATGAGCAATCAAGTGCCAAAAGTTTGAGTAGCA ATCCGGCAGAGGATGAGGATGCTGATGAGTTTCGGATCGATGATGCCCAG TTATCTGGTGGCCAGTTGGCTCAGCACTTCCTGGTCGATGAGGATGAAAG CGAGGAGGGTTCGGATCTTCCAGCTGCCTCCAAAGTGGAGGTTAGTCTCT CCTCTAATGATGATGACTTTGATATCAGTTTGCCATTGGAGCAGAGGAAA CCTGTGCATTCCCTGCACGAAGATGATGAGTCTGTAGATCAAAGTTTAAG TAATCAAAGCACTACGGATGATGTTTCCGAATTGGTCGAGGAGCCAGTCC ATGAGATGGACGATAAAACCGATGGCAGTGCGGCCATTAGTGCCAGTGCA CCTCAAGAAACTCAGGTGGATGAAAGCCAAATAACCGACGAGCAGGATCA CTCTATGGAAGAAATAGTTGCCACAAATGAATCAATTGAGGTGACGTACG AAGCTGAGGAAACCGTCAATACTTCACAGAAACAAGATTTAATCACCGAT TTAGATGAAGAGTCAGAGGATCAGGTGCACGTGGACAACAGGCCCACTTC GACTTTGCAAGCATTGAAGCTTCCTGCGTTGCAACAACCTCAGATTGTAG AAAGGAAAGCTGCTACAGCATTGACCACATTACGTCTGCAAGCAGATGTT TTGGAGCCCTTAGAGTTAACCATTCTGGAAATGGATGATGATGAGAATGA AGAGGATGACGACGATGAGGAGAGTTCCTTGCAACTGATGAAGCTGCGAT TAATGGCCATGAATCAGCAAATGATTGTGGACAATGCACCCAAACTTTCG CCCACGGAAGCGGAACAAACACAAGTAACCAGCAGCAGTAACAATTTAGA AATCAAACAAATGGAGCGAGTGCCACTCACAGAGTTCTCCAAGGATGTTC TGGAGGATATTACCGAAGAAAGCGAGAGACTTCTCTCGATGAGCACAACT ATGGAAGAGGAGCAGGATCCGCCTTCCCTCTCCTTGGATGAGTCTAAAAC TCTGCTGCAGCCAGGAGCACATAAAACTGGGGGCAGCAGTTCCAGTTTGG TGAGTTTAAATATGCTTAAGCAGCTGGAGGCCAAGGTACAGGAACTACAC ACCCAACTGGAGACCAAGGACAACTGCTTGGCATCGCTTAATCTGCAGCT TGAGACAGCAAGAAGAGAATCCAGTGCGGGTCCAGCTTCAGCAAGGGATT CCAGTTCGCTAATGACCAATTCGACAGAGTATCGCACTCTTCAGGAAGAA CTAGGCGGCCCAACATTGGACATTTATGTGGAGATGTCACGGAGGGATGA GTTGATTGCCAAACTAACCGATTCGCTGCAGCAATCGCTGAATGTGCGTG ACAAGCTGCAGGTGGATGCGGATCGTCTGGGTGGCGAAGTACAGAATCTG CGTAGGCAACTCCAAGAGACGCTCGATGCAGTGAAACGCTCGAGTGCCGT ATGGCCCGATCAGGAATGCAATCCCGGTCAGCGTATCTCAGAGATCTCCA TGGATTTGATCAGCGAAAGCGATGATGATCTGGATCGTCATTTTCTCACG GACAACGAAGAGCGCGGATCACGCAGCTCCAAGGAAAGGCAGCTAACTCA GTTACAAACCAACGAAGAATTGGGACTGCAGGCGTCAAACCCGGAGTGGA CACCGACATTTAGCAAGCAGATCGAACAGTTCCACACATATCTGTTGCCC ACCGAACAGCGCATCTTCCAGATGGTCCAGCGCAAGTTCGACGACTATTT GAACCAACAGATCACCTTGTGTCGTGATCTTGGCGCCCAGGAGCTGAAGA TTGCCCGCGATCAGTGGGAGAGCGAGAAGCTAACCAGCGAACAGAACCAG CAGGCAGCTCATGCCAAGCAAATGGAGGATCTGCGCAAGTACTTTGAGCA TAAGTGCGCCGATCTGGAAAAGCAATTCTCGGACGATGTCTTCTCGCACA AGTCACAGCATCAGACAGGGGACAGTTCATCGGAGTGCTCGGAGGTAGAT CAGTTGCCCGAGGAAGGGGCCGCCGCGGTGTCCTCCAAGGAACCATCTCC CCGCAAACGGAAGCGAGCTGAGCTGCTTCTGAGTCCCAGTCACAGGCAGA TGACTCCTTGTGGCTTGGATTCGCTGGGAGAAAACACTGGAAAAACTGAA AAAGACAATACTGCGGATATAGCCGACCTAAAGATCTTTTACCAAACCCA CATCAAGGAGCTAAAGCGCGCGCATGAGGATCAGGTGCGCAAGCTGAGCG ATCGGATAAAGTTCTATGAGCGACAGCAGGGTGATGATGACTATAAGCCT GCAACCGAATCACCCGAACGTACCTGCCCGGATCAGGAATCCGCAGGGGG AGTCGCGAATACCTCCCTTATTATCATCGATGAGGATGAGTTGAATTTCA ACAACGAATCGCAGGTTATTCAGCGAATCATCGAGGAGTACGAGAAGAGA TTGCAGGAGCAATTGGCCTTGGCTCGGCAGGACATCGCCACCGAGTTGGA GCAGCAGATTAAGAGTTTATTGTCGGAGAATACCGTGGACGATCAGCATT GGCCCAAGGAGCTGATCTTGCTGCGCGAGAAGTTTACGGCCAAGAGTCAA CTGGAGATCACTCAGCTGAACATTAAACATGCCGAAGAGATGTCGCGCCT GAAATTAGAATTTGAAAAGCAGCTGAATCGAAAGAACAAGCGCCATCTGA CCTTCGATGCAGCCCGTGACCTGGAGCAGGTGATCTGCGAACGAGATGGA TTGAGGGAGCTGTCCAAGAGTTTCCGCAGCGTACTTTGTCGGCTGGCCAA GTGTGTGGCCCACTGTGAGGAGGATTTGAATGCCACACTATCCGAGGAGG TGCAACGCCTGCTGTTCCACAGTCGCAGTCAAGATGGAGGTGATGATCTG GAGGCTACCATTAGTAGCTCCCTAAATAATACGAAGCACATGCTCCGTGT GCCGGATGTCCACAGCCTGCTGGAAGTTGTGGAGGATCCGAGTTTGGTGC AGTTCATCGACAGCAAGAGCAACGAAGAGCCAAGTGAGGACTTCGATTTG AATGATTGCCTAGAGCGTTTGAAGTCGGAAGCCTCCTACCTGTTGCATTT GTCAGAGGATTTGCATAAGCAGCGGACACACGATGAGTCGTCGGAGCACT TGGACGAACCGGAAAAACAGGAGCATGAGCTCTGCTGCGAGGCGGAAGAT GGTCTGAAGACCACAGGTGCAGTGAATCAACAAGTACTGTCGAAATTCCT GCGCACAAATTCCTTGAACGATCAGCAAATGGGCGTGGCCAATCAGAGGA AGAACAGCAATCCCGAGGCGGGAAAAACACATTCCTCCCTACCTCCAGAT CTTCAAGAGCATGCGGGAAATGCATCAGAGCTGTCGTTCCAGCTTGTGCA GCTAAAGAATCGCTTGATTAAATCGGAGGCAGATCGTCAGAACTTGCAAC AGCAACTCAGTCGCACTATTGATCGCAATGCGGAGCTGGGACAGGAGCTA CAAGCACTTAGGGATCAGCTCTCCCAGTTGAACTCTCTGAACCACACGGA TTACAATGAGGGATACGGCTTGGGCACAATGAAGAGCTTGCAGGAGCAGG GATTGGATCAATCATCGGCCAGTTTTCTTGCCCTCCAAGAGAGAGCGCGT CATTTGCTTTCATCCTCTCCGGTCAAGGAGCAACCATCAAGAGACCACGG CAATTCGACCGTTATCTTGCTACAAATGATCGAGGACTTTTGCCGCGAGG GCGACAAAGTGGTGGAGTTCAGCAAAAAGGATCGCGAGGATCTGCAGTCC CAGTATGCACAACTGGAAAGCCAATTTAGGGAGGTAAATCAACAGTTGTG CGAGTCGAATGCGAAGCGGGATAAATTCGAGGTGGAACTGAAGGCTTCAA TTGACAAAATCTTCGTGCTGCGGGAGATCATCTCAGAGCTGGAAACCCAA GTCCAGACAAAGGCACTCAATGAGGAAGTTTTGGCCGAGAAGGCCCAACA ACTGGAGGAATATGTGAGTTTGCAGATGCGGGACAACGATATACTGCAGC AGGAGGTGCACAGCCTGAAGACAGACATTGGAGAGGGCTATCAATCCCGT ATCAGAGTGCTGGAGGAGAAACTGAAACAGAGTGGACCAACGGCAGAACA AGGTGTGGTCTTGAGTCAGGTTGCGGAAAAGTTAAGAGACATTGAAACCA CACTGGATCAAAAAACCAAAGCTCTGGAATCTCTGCATAACTCCAACGCG ACCTCCAATTCGGCCAGCTTGAGTGTCACCGAAGATGTGTCTATTCATGG CAGCAAGGAACCCACGGCAGTGGGTTCACCCTCGCATCCATCGCTCACCG TGGAAGGTGTTCAACGGGTTACCGAAAAGCTGGACCGGCACACTCGCGTC GAGGAGGCGGCCATTAAGAGGATTCGCGACCTGGAGATGCAGGTTCATCA AATGCGCGCCGGTTGCGTGGAGCTTCAACATGAGCGGGATACGCTGCAGG GTCGTATGGAGGAACAGACTCAGCGTATTTCTACCCTCCAAAATCGGCTG GAGGAGCAGCGACAGCGGGCGGAGCAACTCCATCGGACTGGCACATCAGA CTTGAATACCCGAGTACATGAACTCCAGGGTGAGGTCCAGAACCTATACG AGCAATTGGCGGCGCGGGACAAGCAGATGGCCAACATGCGACAGCAACTG CAGCGCAGCAAGGAGGAGATAACTCGACTGGAGACGGAAGTCGAAGTACG AACACAACCAGATCGCAGTCTGGTGAACAAACTGCAGGCTGAAGTGCAGC AAAAGGGAGCAGAGATCGTGAAGTTAAAGGATAAGATACGCACAGAGATG ATCAACCGTCTGGCTATCCCGGATCTCATGGAGACTATGCTGGCGGACAA GAACGATGAGATAGATCACCTGCGCGATCAACTGGAGGCTAAGGAGAAGG AACTGCAGGCATCTCAACAGGAAGCTAGCCAGATTTCATCCCCGTCTGGA GCAGCAGGAAAGCAGGAGGGTAGCGGTGGCAAGTTGAGTGCCCGAACCCT AAGCGATATCGGATCGATTACAGAGTTCCCCGAGCCGGATGTGGAGCGTC GAGCGGCCATGCGAAGTCTTACCGCTTTACAGATGAGCGAAGGTGCGGGC GGCTTCCTGCACCAGACAATGGAAACTTCTAAGGAAGCCGTGGCTAACTT AACACACAAGCGCACCGATGACCTAAGCGGCTTTATTGTCCCTTACCCGG TTAACACTTTCGAGCATCCGCACTACTTCCAGGCCCTGGGAGTCACTGCA CAGAGCACCGATGGTCTAACGCCTGGTCTGGTGCCGAGGCAGATCAACTT CTCCAACCTTACAGAGGATTCCAAGCTAAAGACGACCAGTCTTCTGATGC ACACACCGGAGTTGCCCAGGCCAACAACTCCTCCAGAGATTCATCAGCTG CGAGTAAAGCTTTCCGATTTGCAAACCGAAAAACAGAGACAGCAGAGTGA ATTGGAGAAGAAGTTACAGGATCTGCAAAAAGAACTAGAGCAGGAGAAGG AGAAGCTGAGTCGTCAAGCGCAAACTTTGCAAAGTTACGAGGAGAGTGAA GCTAAGTATAGGCTTCGCATAGAGAACCTGGAGTCCAAGGTGCTGGAAAC AGCTGCCCAGGCGGCTTCTGATCGAGAAAATCTCCGTAAGGAACTGAATT GCGTTAGTGCGGCCCATGAACAATGTGAAAATGCAGCTGCTGCTCGCAAA CGGGAATTGGAGAAACTGAATAGTGAAGTCAAGGTAAAGGCCGATCAGCT GCATGCTGCTTTACGACGATGTGCAGATCTCGAACTGCAGGTTCTAACAC TAGAACGCGATTTGGAGCGCCTAAAGAACAGTGATAATAGTTCGAAGCAA TATTCGGTGGACGAAATTGCCCAGCAGGTGGAAAAGGAATTAAACTACTC TGCTCAGCTGGATTCAAACATCCTTAAAGCAATTGAAAGCGAGGAGGAAA ACAATCTGGACAAGAAGCTGCAGAAAGGTGTCCAAACGGAGGAGGAGACT TTACCTGGAACTGGCAATGGAACCGACGACGAGAACTTCACTGGCGAGCG GGAACTACTAAATCAGTTGGAAGCCCTGCGTGCTCAATTGGCCGTGGAGC GTGAGCAATGCGAAGCAATGAGCAAGGAGCTACTGGGAGAGAAACAGCAT TCGCAGGATATTCAAGAGCAGGATGTGATTATCATAGAAGCCATGAGGAA ACGACTGGAGACAGCTCTTGATGCCGAGGACGAGCTCCACAAACAGCTCG ATCAGGAACGGGAACGTTGTGAGCGTCTTCAAACGCAATTGACATCGCTG CAACGAGCGGAAAGTAGAAGAAACAGTTCCCTGCTACTGAAGTCGCCGGG CGACTCGCCCAGGAAATCTCCACGGGCTGATTTTGAATCCGAACTCGGAG ATCGTCTGCGCAGTGAGATTAAACTGCTGGTTGCTCAAAATGAAAGGGAA CGGGAGAGATCTGCGGATGCTCAACGGAGCAGTGAGCGGGAACGTCAGCG GTATGAAAAAGAGCTCCAGGAGCGAGTGGCATACTGTGAGCGGCTGAAAC AGGAAATGGAGAAGCTATCTCGGGATAAGGAGTCCGCCGAAACAGAGTTG GAACACTTCAATGAACGTTTAACCCTGCAAGCCAGTGAAATCGAAAGTTT GGAGGCTAGGTTAGTCACCCTCCAGGAGGCGGAAACGCGAAGGGCCAACA CACGCACCCGTCAGCATCAGGAGAACGTCAAGCTCCAGGCCGAGATCCAT GAACTAAAGTCCAAACTTCTGGCGGCCGAAGCAGCACGGGATTGCCTGGA CCAAAAAGTCACCCAACTGCGTTTCGATGTGAGTCGTTCTGGTCAGAGGG AGGCCAAACTAGCTGAGGCCTTAGCTCAGGCCAATGATCGATTGGCTCAT AGCACCGATGACAATGTGCCGGCGCAGTTCATGCAGAAGATGAAGGAGAT CAACGCCCTGCTGGCGGAGAACACTCAGGAAAACCGGCAAATGGCTGAGA CGGTCCAGTTTTTGGTGGGCGAACGTATTGCTCTGCAGAAGAAATGCGAA GAGTTGGGTGGAGCTGGTAACACCAATGTCACCGAGCTGGAGGAGCGCTG CCGGCAGTTGATCGGTCGCTATTTACGAGTGGAGTCCCATCGGAAGGCGC TGGTCTACCAGAAGAGGTATTTGAAGCTCACACTGGAAGGTTACCAGGCC AGTGAGCAATTGGCTCTGCAGAATCTGAGAGGTGGTGCTGAACAGCCTCC ACAGCGAAACATCAAAAAGAAGTTTAAGACGGTAGCCCTTGCGATCATTG CCATCCAGCGAATTAAATACATTGGACGCATCTGGCACACGGGAAAGCGG ATTGTTAGCAAGTCAGTCTTCACAATTACTCAGCAGAGAAGTCCTGGACT AAACCTCAATGTGGCGCCTCCCCAATCCCCACTGCCTGGACCCAACTCAA ATCTACCCACCAATAACAACAACCTCATGGGCCGCCTTAGTTATGCGCCC CTCTCACCGCCAATGGTTAACTTCAGCACCGTGCAGCCAATAATGCTGCC ATCGGATTTCACCCTTCAAGCGCCAACAACTTCGTTGCAGACCACCATTG CCAATAACAATAGCGAAAACACCCTGCCATCATTGGCAAGATTGGACTGG CCGACGATGCAAAAACCAAAAAGAGCGCATGCGCGGCATCATTAAGCCCA GGATAGCAGAGTTGAGTTCCATCAAGAAGAACTTAACTGAATGCCCTAAC TTTAAGTGAAGCCATATCGAAGACACTCTGCAAGCATGAAAGCATCAAGG ATGTTGGACAAGCGATCCATTTTAGAGTTAATCACCTGTACCATTTCCCC TCATTATTAGATCTTAAGCTGTTGTAACCTATTTTAAGCGTTCGCGCAAC CACAACAAACCTAGAAATGTAATCGTCTGTAAGTGTTATTTGTATTTACC GCCCAAATGTAGCCATAAGCATAATGCTAATCCATGTCCCAGTATTTTGA TTGGTTCGACTGACTATTGGCTGACAAATCCCAGAGTCACTTACATATAT TTAGTTTTATTTCATTTGGGTTCTGACTGTATAAGTTTCCTGCTAAGTTG ATTAAACCAAATTTATTTCACATTCG
Other Products of this Gene
Other Transcripts
	Name FlyBase ID Length (nt) cp309-RC FBtr0099993 3879 cp309-RD FBtr0305977 9110 cp309-RF FBtr0305979 9494 cp309-RG FBtr0333939 9335 cp309-RH FBtr0333940 6175 cp309-RJ FBtr0333941 9281 cp309-RK FBtr0333942 9302 cp309-RM FBtr0333944 9065 cp309-RN FBtr0333945 9233 cp309-RO FBtr0333946 6007 cp309-RP FBtr0333947 9473
Polypeptides
Derived from THIS transcript	Name FlyBase ID Length (aa) cp309-PL FBpp0306068 2839
Derived from OTHER transcripts	Name FlyBase ID Length (aa) cp309-PC FBpp0099787 1109 cp309-PD FBpp0297119 2767 cp309-PF FBpp0297121 2895 cp309-PG FBpp0306064 2891 cp309-PH FBpp0306065 1757 cp309-PJ FBpp0306066 2666 cp309-PK FBpp0306067 2831 cp309-PM FBpp0306069 2594 cp309-PN FBpp0306070 2650 cp309-PO FBpp0306071 1701 cp309-PP FBpp0306072 2730
Comments
	Transcript terminates at site supported by polyadenylated cDNA.
External Crossreferences
	RefSeq - An integrated, non-redundant set of sequences • NM_001274934
Synonyms
	cp309-RL
References ( 1 )
FlyBase analysis	FlyBase Genome Annotators, 2004, Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. [FBrf0166453]