Transcript Dmel\cp309-RN

General Information
Symbol	Dmel\cp309-RN	Species	D. melanogaster
Annotation Symbol	CG33957-RN	FlyBase ID	FBtr0333945
Feature type	mRNA	Associated gene	Dmel\cp309

Evidence Rank	Weakly Supported	Length (nt)	9233
Evidence Score	3

Map ( GBrowse )
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
cDNA Clones Consistent with the Transcript ( 126 )
cDNA Clones, Fully Sequenced
Exact Match
Contained within the annotated transcript, internally consistent
End(s) extend beyond the annotated transcript, internally consistent
cDNA Clones, End Sequence Only (ESTs)
Contained within the annotated transcript, internally consistent	36801 52349 60661 73986 107080 120459 121940 542607 561842 CK01.63C.H7 EC052285 EC052824 EC053809 EC054269 EC055170 EK051332 EK148017 EK167116 EK185758 EK229905 EK242327 EK245252 EK265801 EN10943 EN13233 LD22031 LP06045 RE56363 RP003004278 RP003008598 RP003050061 RP003069126 RP003090591 RP003091727 RP003103603 RP003106914 RP003120009 RP003140988 RP003141877 RP003153595 RP003154373 RP003158210 RP003167886 RP003189073 RP003195843 RP003200882 RP003209651 RP003216582 RP003216647 RP003218682 RP003229527 RP003233593 RP003235519 RP003239038 RP003240089 RP003251066 RP003251493 RP003251662 RP003251686 RP003252043 RP003258640 RP003265566 RP003268129 RP003272597 RP003275597 RP003280309 RP003282161 RP003284601 RP003284930 RP003285149 RP003296826 RP003298574 RP003302973 RP003305602 RP003310936 RP003316603 RP003334705 RP003335339 RP003336002 RP003338254 RP003342894 RP003343545 RP003344622 RP003350766 RP003351370 RP003357956 RP003378907 RP003389829 RP003398874 RP003418221 RP003437910 RP003444428 RP003453489 RP003460981 RP003462546 RP003463196 RP003472018 RP003478793 RP003491062 RP003491911 RP003497135 RP003510412 RP003517332 RP003526230 RP003526684 RP003551028 RP003572529 RP003583538 RP003596114 RP003602625 RP003605204 RP003612136 RP003613554 RP003615115 RP003624887 RP003625708 RP003627397 RP003629040 RP003641153 RP003646387 RP003650569 RP003659701 RP003664109 RP003681430 RP003682413
End(s) extend beyond the annotated transcript, internally consistent	RP003653313
Sequence
	TGTTTAGTTTTTGTTTTAATTATGTAGGCGCAGCATTGCAGTCTGGTTTT TCCCATATAATTTGCTCAATTTTGGTTTAGTTCGGCCGAACTCAAGTGCT GCCCAAACCAATTGCTCAAACGCGTAGCGCACAAATTGAAAAACAAGCGG TTAATGTGAAAAACAGGACGAGTTTAGTTGTTTTCTATCCGAGGGGACGC GGCGTTGCAACAACAGCGACGCTATGCGACCGCATTTCGAGCGATAAAAC AGAAAGGCGCTGCCACACATAACGGTTGATGTTTGTTTTTACGACAACGC ACACACACGTACACCGGCCAAAGAGGCAGCGGTCACAACAACAAAGGTCT TCGTTCGATCACATCATTGCTCCGGCCGCACGGTGCCAGTGTAAGCTATA AGGCGATCGAAGCGGCGACTCTCGAAGAATTGCCAGCAACATCCGTGGCA ACAGCAACATCCACGGCTGCAACATCACGCGCCACTGGAGGAGCAGCAGC AACTTGTGTGGACGTTGAGTTCATACCCACGCTAAATATCATATTTGAGA AGCCGACTTCGTCGAGTGAGCAACTACAGTGCGCCGAGAAATCGGAACAT GTGGCCGGTGGTGTGTCCGATAAGGAACCAGCAGATGATTGTGACTCCGA CAATGATTCTACGCGCACATATATAATCTCGCGAAGCAGTTGGACGGGGG TAACATCGAGTAGCAGCACCCCATATGCGGTTACATCCACGGATACCGCC GAATTACTCAGGCGCCAGAACAATCTCAGCCTTACGGAGGAAGATCAATC TGTGTCGTCGTTTAGCATCGAGCAGCCCACCAGTTCCATAACCATTGAAA TGGCCGATCAACGGACAACCACGACCACCACAACAACGGCGACGACGGCA ACAACGCCGAGCAGTGCTAACATTCTGGCCACAACAGCAACGACAACGAC CACAACTAGCAGTAGTATTGAGGAGGAGATCGAAGAGGCCATCGAGATCA GTGAGGTGGAGGAGCAGCTAAATACTCCACTGGAATCTCTATCGGAGGCG GCTGCCTATGCCCGGCCAAAGGATGAGCAATCAAGTGCCAAAAGTTTGAG TAGCAATCCGGCAGAGGATGAGGATGCTGATGAGTTTCGGATCGATGATG CCCAGTTATCTGGTGGCCAGTTGGCTCAGCACTTCCTGGTCGATGAGGAT GAAAGCGAGGAGGGTTCGGATCTTCCAGCTGCCTCCAAAGTGGAGGTTAG TCTCTCCTCTAATGATGATGACTTTGATATCAGTTTGCCATTGGAGCAGA GGAAACCTGTGCATTCCCTGCACGAAGATGATGAGTCTGTAGATCAAAGT TTAAGTAATCAAAGCACTACGGATGATGTTTCCGAATTGGTCGAGGAGCC AGTCCATGAGATGGACGATAAAACCGATGGCAGTGCGGCCATTAGTGCCA GTGCACCTCAAGAAACTCAGGTGGATGAAAGCCAAATAACCGACGAGCAG GATCACTCTATGGAAGAAATAGTTGCCACAAATGAATCAATTGAGGTGAC GTACGAAGCTGAGGAAACCGTCAATACTTCACAGAAACAAGATTTAATCA CCGATTTAGATGAAGAGTCAGAGGATCAGGTGCACGTGGACAACAGGCCC ACTTCGACTTTGCAAGCATTGAAGCTTCCTGCGTTGCAACAACCTCAGAT TGTAGAAAGGAAAGCTGCTACAGCATTGACCACATTACGTCTGCAAGCAG ATGTTTTGGAGCCCTTAGAGTTAACCATTCTGGAAATGGATGATGATGAG AATGAAGAGGATGACGACGATGAGGAGAGTTCCTTGCAACTGATGAAGCT GCGATTAATGGCCATGAATCAGCAAATGATTGTGGACAATGCACCCAAAC TTTCGCCCACGGAAGCGGAACAAACACAAGTAACCAGCAGCAGTAACAAT TTAGAAATCAAACAAATGGAGCGAGTGCCACTCACAGAGTTCTCCAAGGA TGTTCTGGAGGATATTACCGAAGAAAGCGAGAGACTTCTCTCGATGAGCA CAACTATGGAAGAGGAGCAGGATCCGCCTTCCCTCTCCTTGGATGAGTCT AAAACTCTGCTGCAGCCAGGAGCACATAAAACTGGGGGCAGCAGTTCCAG TTTGGTGAGTTTAAATATGCTTAAGCAGCTGGAGGCCAAGGTACAGGAAC TACACACCCAACTGGAGACCAAGGACAACTGCTTGGCATCGCTTAATCTG CAGCTTGAGACAGCAAGAAGAGAATCCAGTGCGGGTCCAGCTTCAGCAAG GGATTCCAGTTCGCTAATGACCAATTCGACAGAGTATCGCACTCTTCAGG AAGAACTAGGCGGCCCAACATTGGACATTTATGTGGAGATGTCACGGAGG GATGAGTTGATTGCCAAACTAACCGATTCGCTGCAGCAATCGCTGAATGT GCGTGACAAGCTGCAGGTGGATGCGGATCGTCTGGGTGGCGAAGTACAGA ATCTGCGTAGGCAACTCCAAGAGACGCTCGATGCAGTGAAACGCTCGAGT GCCGTATGGCCCGATCAGGAATGCAATCCCGGTCAGCGTATCTCAGAGAT CTCCATGGATTTGATCAGCGAAAGCGATGATGATCTGGATCGTCATTTTC TCACGGACAACGAAGAGCGCGGATCACGCAGCTCCAAGGAAAGGCAGCTA ACTCAGTTACAAACCAACGAAGAATTGGGACTGCAGGCGTCAAACCCGGA GTGGACACCGACATTTAGCAAGCAGATCGAACAGTTCCACACATATCTGT TGCCCACCGAACAGCGCATCTTCCAGATGGTCCAGCGCAAGTTCGACGAC TATTTGAACCAACAGATCACCTTGTGTCGTGATCTTGGCGCCCAGGAGCT GAAGATTGCCCGCGATCAGTGGGAGAGCGAGAAGCTAACCAGCGAACAGA ACCAGCAGGCAGCTCATGCCAAGCAAATGGAGGATCTGCGCAAGTACTTT GAGCATAAGTGCGCCGATCTGGAAAAGCAATTCTCGGACGATGTCTTCTC GCACAAGTCACAGCATCAGACAGGGGACAGTTCATCGGAGTGCTCGGAGG TAGATCAGTTGCCCGAGGAAGGGGCCGCCGCGGTGTCCTCCAAGGAACCA TCTCCCCGCAAACGGAAGCGAGCTGAGCTGCTTCTGAGTCCCAGTCACAG GCAGATGACTCCTTGTGGCTTGGATTCGCTGGGAGAAAACACTGGAAAAA CTGAAAAAGACAATACTGCGGATATAGCCGACCTAAAGATCTTTTACCAA ACCCACATCAAGGAGCTAAAGCGCGCGCATGAGGATCAGGTGCGCAAGCT GAGCGATCGGATAAAGTTCTATGAGCGACAGCAGGGTGATGATGACTATA AGAGTTTATTGTCGGAGAATACCGTGGACGATCAGCATTGGCCCAAGGAG CTGATCTTGCTGCGCGAGAAGTTTACGGCCAAGAGTCAACTGGAGATCAC TCAGCTGAACATTAAACATGCCGAAGAGATGTCGCGCCTGAAATTAGAAT TTGAAAAGCAGCTGAATCGAAAGAACAAGCGCCATCTGACCTTCGATGCA GCCCGTGACCTGGAGCAGGTGATCTGCGAACGAGATGGATTGAGGGAGCT GTCCAAGAGTTTCCGCAGCGTACTTTGTCGGCTGGCCAAGTGTGTGGCCC ACTGTGAGGAGGATTTGAATGCCACACTATCCGAGGAGGTGCAACGCCTG CTGTTCCACAGTCGCAGTCAAGATGGAGGTGATGATCTGGAGGCTACCAT TAGTAGCTCCCTAAATAATACGAAGCACATGCTCCGTGTGCCGGATGTCC ACAGCCTGCTGGAAGTTGTGGAGGATCCGAGTTTGGTGCAGTTCATCGAC AGCAAGAGCAACGAAGAGCCAAGTGAGGACTTCGATTTGAATGATTGCCT AGAGCGTTTGAAGTCGGAAGCCTCCTACCTGTTGCATTTGTCAGAGGATT TGCATAAGCAGCGGACACACGATGAGTCGTCGGAGCACTTGGACGAACCG GAAAAACAGGAGCATGAGCTCTGCTGCGAGGCGGAAGATGGTCTGAAGAC CACAGGTGCAGTGAATCAACAAGTACTGTCGAAATTCCTGCGCACAAATT CCTTGAACGATCAGCAAATGGGCGTGGCCAATCAGAGGAAGAACAGCAAT CCCGAGGCGGGAAAAACACATTCCTCCCTACCTCCAGATCTTCAAGAGCA TGCGGGAAATGCATCAGAGCTGTCGTTCCAGCTTGTGCAGCTAAAGAATC GCTTGATTAAATCGGAGGCAGATCGTCAGAACTTGCAACAGCAACTCAGT CGCACTATTGATCGCAATGCGGAGCTGGGACAGGAGCTACAAGCACTTAG GGATCAGCTCTCCCAGTTGAACTCTCTGAACCACACGGATTACAATGAGG GATACGGCTTGGGCACAATGAAGAGCTTGCAGGAGCAGGGATTGGATCAA TCATCGGCCAGTTTTCTTGCCCTCCAAGAGAGAGCGCGTCATTTGCTTTC ATCCTCTCCGGTCAAGGAGCAACCATCAAGAGACCACGGCAATTCGACCG TTATCTTGCTACAAATGATCGAGGACTTTTGCCGCGAGGGCGACAAAGTG GTGGAGTTCAGCAAAAAGGATCGCGAGGATCTGCAGTCCCAGATCGATAC CGCTGACAAGCAGCTGAAGGATACCAGGCGATTCCTGGAGGATCAGGCCG CCGAACGCGAACAGGAACGCGATGAGTTCCAGCGCGAAATCGAGCGGCTG AAGGCTCAGTTGCGCGACAAAGAGAAGGAGCACAGCTCCTATGCCAATGC CTCCGAGGAGTATGCACAACTGGAAAGCCAATTTAGGGAGGTAAATCAAC AGTTGTGCGAGTCGAATGCGAAGCGGGATAAATTCGAGGTGGAACTGAAG GCTTCAATTGACAAAATCTTCGTGCTGCGGGAGATCATCTCAGAGCTGGA AACCCAAGTCCAGACAAAGGCACTCAATGAGGAAGTTTTGGCCGAGAAGG CCCAACAACTGGAGGAATATGTGAGTTTGCAGATGCGGGACAACGATATA CTGCAGCAGGAGGTGCACAGCCTGAAGACAGACATTGGAGAGGGCTATCA ATCCCGTATCAGAGTGCTGGAGGAGAAACTGAAACAGAGTGGACCAACGG CAGAACAAGGTGTGGTCTTGAGTCAGGTTGCGGAAAAGTTAAGAGACATT GAAACCACACTGGATCAAAAAACCAAAGCTCTGGAATCTCTGCATAACTC CAACGCGACCTCCAATTCGGCCAGCTTGAGTGTCACCGAAGATGTGTCTA TTCATGGCAGCAAGGAACCCACGGCAGTGGGTTCACCCTCGCATCCATCG CTCACCGTGGAAGGTGTTCAACGGGTTACCGAAAAGCTGGACCGGCACAC TCGCGTCGAGGAGGCGGCCATTAAGAGGATTCGCGACCTGGAGATGCAGG TTCATCAAATGCGCGCCGGTTGCGTGGAGCTTCAACATGAGCGGGATACG CTGCAGGGTCGTATGGAGGAACAGACTCAGCGTATTTCTACCCTCCAAAA TCGGCTGGAGGAGCAGCGACAGCGGGCGGAGCAACTCCATCGGACTGGCA CATCAGACTTGAATACCCGAGTACATGAACTCCAGGGTGAGGTCCAGAAC CTATACGAGCAATTGGCGGCGCGGGACAAGCAGATGGCCAACATGCGACA GCAACTGCAGCGCAGCAAGGAGGAGATAACTCGACTGGAGACGGAAGTCG AAGTACGAACACAACCAGATCGCAGTCTGGTGAACAAACTGCAGGCTGAA GTGCAGCAAAAGGGAGCAGAGATCGTGAAGTTAAAGGATAAGATACGCAC AGAGATGATCAACCGTCTGGCTATCCCGGATCTCATGGAGACTATGCTGG CGGACAAGAACGATGAGATAGATCACCTGCGCGATCAACTGGAGGCTAAG GAGAAGGAACTGCAGGCATCTCAACAGGAAGCTAGCCAGATTTCATCCCC GTCTGGAGCAGCAGGAAAGCAGGAGGGTAGCGGTGGCAAGTTGAGTGCCC GAACCCTAAGCGATATCGGATCGATTACAGAGTTCCCCGAGCCGGATGTG GAGCGTCGAGCGGCCATGCGAAGTCTTACCGCTTTACAGATGAGCGAAGG TGCGGGCGGCTTCCTGCACCAGACAATGGAAACTTCTAAGGAAGCCGTGG CTAACTTAACACACAAGCGCACCGATGACCTAAGCGGCTTTATTGTCCCT TACCCGGTTAACACTTTCGAGCATCCGCACTACTTCCAGGCCCTGGGAGT CACTGCACAGAGCACCGATGGTCTAACGCCTGGTCTGGTGCCGAGGCAGA TCAACTTCTCCAACCTTACAGAGGATTCCAAGCTAAAGACGACCAGTCTT CTGATGCACACACCGGAGTTGCCCAGGCCAACAACTCCTCCAGAGATTCA TCAGCTGCGAGTAAAGCTTTCCGATTTGCAAACCGAAAAACAGAGACAGC AGAGTGAATTGGAGAAGAAGTTACAGGATCTGCAAAAAGAACTAGAGCAG GAGAAGGAGAAGCTGAGTCGTCAAGCGCAAACTTTGCAAAGTTACGAGGA GAGTGAAGCTAAGTATAGGCTTCGCATAGAGAACCTGGAGTCCAAGGTGC TGGAAACAGCTGCCCAGGCGGCTTCTGATCGAGAAAATCTCCGTAAGGAA CTGAATTGCGTTAGTGCGGCCCATGAACAATGTGAAAATGCAGCTGCTGC TCGCAAACGGGAATTGGAGAAACTGAATAGTGAAGTCAAGGTAAAGGCCG ATCAGCTGCATGCTGCTTTACGACGATGTGCAGATCTCGAACTGCAGGTT CTAACACTAGAACGCGATTTGGAGCGCCTAAAGAACAGTGATAATAGTTC GAAGCAATATTCGGTGGACGAAATTGCCCAGCAGGTGGAAAAGGAATTAA ACTACTCTGCTCAGCTGGATTCAAACATCCTTAAAGCAATTGAAAGCGAG GAGGAAAACAATCTGGACAAGAAGCTGCAGAAAGGTGTCCAAACGGAGGA GGAGACTTTACCTGGAACTGGCAATGGAACCGACGACGAGAACTTCACTG GCGAGCGGGAACTACTAAATCAGTTGGAAGCCCTGCGTGCTCAATTGGCC GTGGAGCGTGAGCAATGCGAAGCAATGAGCAAGGAGCTACTGGGAGAGAA ACAGCATTCGCAGGATATTCAAGAGCAGGATGTGATTATCATAGAAGCCA TGAGGAAACGACTGGAGACAGCTCTTGATGCCGAGGACGAGCTCCACAAA CAGCTCGATCAGGAACGGGAACGTTGTGAGCGTCTTCAAACGCAATTGAC ATCGCTGCAACGAGCGGAAAGTAGAAGAAACAGTTCCCTGCTACTGAAGT CGCCGGGCGACTCGCCCAGGAAATCTCCACGGGCTGATTTTGAATCCGAA CTCGGAGATCGTCTGCGCAGTGAGATTAAACTGCTGGTTGCTCAAAATGA AAGGGAACGGGAGAGATCTGCGGATGCTCAACGGAGCAGTGAGCGGGAAC GTCAGCGGTATGAAAAAGAGCTCCAGGAGCGAGTGGCATACTGTGAGCGG CTGAAACAGGAAATGGAGAAGCTATCTCGGGATAAGGAGTCCGCCGAAAC AGAGTTGGAACACTTCAATGAACGTTTAACCCTGCAAGCCAGTGAAATCG AAAGTTTGGAGGCTAGGTTAGTCACCCTCCAGGAGGCGGAAACGCGAAGG GCCAACACACGCACCCGTCAGCATCAGGAGAACGTCAAGCTCCAGGCCGA GATCCATGAACTAAAGTCCAAACTTCTGGCGGCCGAAGCAGCACGGGATT GCCTGGACCAAAAAGTCACCCAACTGCGTTTCGATGTGAGTCGTTCTGGT CAGAGGGAGGCCAAACTAGCTGAGGCCTTAGCTCAGGCCAATGATCGATT GGCTCATAGCACCGATGACAATGTGCCGGCGCAGTTCATGCAGAAGATGA AGGAGATCAACGCCCTGCTGGCGGAGAACACTCAGGAAAACCGGCAAATG GCTGAGACGGTCCAGTTTTTGGTGGGCGAACGTATTGCTCTGCAGAAGAA ATGCGAAGAGTTGGGTGGAGCTGGTAACACCAATGTCACCGAGCTGGAGG AGCGCTGCCGGCAGTTGATCGGTCGCTATTTACGAGTGGAGTCCCATCGG AAGGCGCTGGTCTACCAGAAGAGGTATTTGAAGCTCACACTGGAAGGTTA CCAGGCCAGTGAGCAATTGGCTCTGCAGAATCTGAGAGGTGGTGCTGAAC AGCCTCCACAGCGAAACATCAAAAAGAAGTTTAAGACGGTAGCCCTTGCG ATCATTGCCATCCAGCGAATTAAATACATTGGACGCATCTGGCACACGGG AAAGCGGATTGTTAGCAAGTCAGTCTTCACAATTACTCAGCAGAGAAGTC CTGGACTAAACCTCAATGTGGCGCCTCCCCAATCCCCACTGCCTGGACCC AACTCAAATCTACCCACCAATAACAACAACCTCATGGGCCGCCTTAGTTA TGCGCCCCTCTCACCGCCAATGGTTAACTTCAGCACCGTGCAGCCAATAA TGCTGCCATCGGATTTCACCCTTCAAGCGCCAACAACTTCGTTGCAGACC ACCATTGCCAATAACAATAGCGAAAACACCCTGCCATCATTGGCAAGATT GGACTGGCCGACGATGCAAAAACCAAAAAGAGCGCATGCGCGGCATCATT AAGCCCAGGATAGCAGAGTTGAGTTCCATCAAGAAGAACTTAACTGAATG CCCTAACTTTAAGTGAAGCCATATCGAAGACACTCTGCAAGCATGAAAGC ATCAAGGATGTTGGACAAGCGATCCATTTTAGAGTTAATCACCTGTACCA TTTCCCCTCATTATTAGATCTTAAGCTGTTGTAACCTATTTTAAGCGTTC GCGCAACCACAACAAACCTAGAAATGTAATCGTCTGTAAGTGTTATTTGT ATTTACCGCCCAAATGTAGCCATAAGCATAATGCTAATCCATGTCCCAGT ATTTTGATTGGTTCGACTGACTATTGGCTGACAAATCCCAGAGTCACTTA CATATATTTAGTTTTATTTCATTTGGGTTCTGACTGTATAAGTTTCCTGC TAAGTTGATTAAACCAAATTTATTTCACATTCG
Other Products of this Gene
Other Transcripts
	Name FlyBase ID Length (nt) cp309-RC FBtr0099993 3879 cp309-RD FBtr0305977 9110 cp309-RF FBtr0305979 9494 cp309-RG FBtr0333939 9335 cp309-RH FBtr0333940 6175 cp309-RJ FBtr0333941 9281 cp309-RK FBtr0333942 9302 cp309-RL FBtr0333943 9326 cp309-RM FBtr0333944 9065 cp309-RO FBtr0333946 6007 cp309-RP FBtr0333947 9473
Polypeptides
Derived from THIS transcript	Name FlyBase ID Length (aa) cp309-PN FBpp0306070 2650
Derived from OTHER transcripts	Name FlyBase ID Length (aa) cp309-PC FBpp0099787 1109 cp309-PD FBpp0297119 2767 cp309-PF FBpp0297121 2895 cp309-PG FBpp0306064 2891 cp309-PH FBpp0306065 1757 cp309-PJ FBpp0306066 2666 cp309-PK FBpp0306067 2831 cp309-PL FBpp0306068 2839 cp309-PM FBpp0306069 2594 cp309-PO FBpp0306071 1701 cp309-PP FBpp0306072 2730
Comments
	5' non-coding exons overlap with CG6945. Transcript terminates at site supported by polyadenylated cDNA.
External Crossreferences
	RefSeq - An integrated, non-redundant set of sequences • NM_001274936
Synonyms
	cp309-RN
References ( 1 )
FlyBase analysis	FlyBase Genome Annotators, 2004, Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. [FBrf0166453]