Transcript Dmel\pHCl-RN

General Information
Symbol	Dmel\pHCl-RN	Species	D. melanogaster
Annotation Symbol	CG44099-RN	FlyBase ID	FBtr0334981
Feature type	mRNA	Associated gene	Dmel\pHCl

Evidence Rank	Weakly Supported	Length (nt)	6629
Evidence Score	3

Map ( GBrowse )
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
cDNA Clones Consistent with the Transcript ( 24 )
cDNA Clones, Fully Sequenced
Exact Match
Contained within the annotated transcript, internally consistent
End(s) extend beyond the annotated transcript, internally consistent
cDNA Clones, End Sequence Only (ESTs)
Contained within the annotated transcript, internally consistent	41856 71625 81552 99374 101266 214439.28 AM02141 CK01.41B.C11 CK01.92C.H6 CK01.110A.F2 CK01.116B.E1 EK072348 EK099353 EK155018 EK159403 EK199730 EK213001 EK222061 EK243549 EP01744 EP02326 EP09647 IP07360 IP07560
End(s) extend beyond the annotated transcript, internally consistent
Sequence
	AGTTCGGGTCGGGTTTGCAATTCAACAGCACTGCGGAAGCGGAGAAAACT CGTCACCAAAGCGGACGGGCCAAACAATAAGCCAGCGTAGCCACAGCCAG CGGCAAGTGCACATAAGTTGCAACAAGCAAAGTAACAACTACAGCAACAG CAAAAACAACGTAACAAAATAGGTAAAACAGTATAAACAACGCAACATTG TAAGCTGGCTGAAAGGCGTTGCCAGATTGTTGGCCAACAGCAATAGCAAC AACCGCACTAGCAACAGCTACAGCAGTACTACAACAACAACAACAACCAT AACAATTGCCCAAAGGGCCAAATGAACGTTGTCGGCTAGTCCGTCTGTCG CCCGCTTGGTGGCGCTAGCTAACTGACTGAGCAACAACAACAACACTGCG TGCTGCCGCTGGAAATCCTGTCGCTAATTAGCGAACTGGCGACGTGTGCG CTTATGCAGACACAAGGCGATAGCGGATTCCATTGAACTGGCTGCCGGTT TAAATTTGTTTTCGTAACATGGGCTGCGTCTTTGAAGCGGCCAAAGAGCA GCCCCACAAACCGAGAAGCAGGCAACTGAGGCGCAACCAATGCCGTGGAA AAGCGGAAAAAGCAGCAGCGGGGACCAGAGGCAAGGTCGCTGTCAGAGGA AACAACGACAAGCCAGCTGAGGACATCAAAATCAAGGATAACTATCAACA AAACCATAAAACGCAAACCGAAACACAAACAGAAGTAGCAGCAGTAGTAG CAATAGCAACAGACGCAGGAGCAGAAACAGAAACTGAAACAGAGGCTGAG GCCCAAAAAGAGCCAGCAACCGGGCCCGAACATCTGAAGGCGGCGGCTCA AGTGCTTTTAACGATACGGCAGGCACGTCAGGAGAACAACAAGCACAGTA GTAGTCAAGTGGCTGAAACGCACAAGGACGAAGGCGAGGACGCGTTGGCG CGGCAAGGATCCATTGTCGATACGGCGGCGGGCAGAATCGGAATCGATAT TGCGGCAACAACGATTCAAGTCGCCGAGCGGCATGAGGATGGGCAGCATT GGCAGCAACACAATGTCCGCCGGCGGAGGCGCCAGCCAGATCCTGCAGCG CATCCTGCAAGCATCACCAAACTTTCGGCAATATCCCTGCATTTTCACGC CCTCGCCGCCCTAGCGAAAACGCTCCAAAAGCACGAGGACCTGAGTCCTG TCCAGGATCGCCAGCCCCTAGCGTACCGGGCGTGGCAAGAACATCCGTAT GCCGAGACCCAAATGCCCGCCACCATGTCAGCGGCCATCATTGCGAATGT CGGCGCTACTGCAGCGGCCACCTCGGCAGCCGCCTTCCAGTATCTCGGCC AGCACTACAAGCACTACAGCCAGTCGATCAGCTTCTACGCCGCCTCCAGT GTGCTCCTGATGCTTTGTTATCTGACCACCGCGTCCACGGCAGCTGCCAC GCAGTCGGAGACGGGTGCCCTCGACAAGCATCCCATTCATGGCATCGATT GGTCGAAATTTGATGAGTCCAGTTCGGATAAGGAAATATTAGATTTACTG CTTGAGAAGAAGCGCTACGATAAACGATTACTGCCGCCTGTAAATGATGA AGACTTTTGCTGTGGCTTGCAATCGCCCGATATGGCAACTAATCAAAATG CACGGAGACCACACAATCGCGGCACTCTGACGGTGAACGTGAACGTGCTG CTCCTGAGCTTAGCATCGCCCGACGAAAGCAGTTTGAAATACGAGGTTGA ATTTCTGCTGAACCAGCAATGGAACGATCCGCGACTGCAATATGGCAATA AGTCTCATTATGACTTCTTAAATGCTCTGCATCATCATGATAGCATCTGG ACGCCGGATACGTATTTCATTATGCATGGCGATTTCAAGGATCCCATCAT ACCAATGCATTTCGCTTTAAGAATATTTCGGAACGGGACCATTACGTACG CAATGAGACGTCACCTGATCTTATCCTGCCAGGGAAGTCTTCATATATTT CCATTCGATGACCCCAAGTGTTCCTTCTCCATGGAGAGCATTTCCTACGA GGAGGCCCAAATCAAGTACGTCTGGAAAAACGATGAGGACACTCTGCGGA AGAGTCCTTCGCTGACCACATTGAACGCGTACTTAATCAAGAATCAAACG ACGGCCTGCGATCAGAACAGCTGGAGAGGTAATTACAGTTGCCTACAGGT CGAGTTGACATTTACCCGTGATCGTGCGTATTATTTTACAACCGTTTTCA TACCTGGCATTATATTGGTCACCTCGTCGTTTATCACATTTTGGCTGGAA TGGAATGCAGTCCCAGCCCGGGTTATGATCGGCGTGACAACAATGCTGAA TTTCTTCACTACCTCGAACGGTTTCCGGAGCACTCTGCCGGTTGTTTCTA ATCTGACGGCGATGAACGTGTGGGACGGCGTGTGTATGTGCTTCATCTAC GCCTCCTTGCTGGAATTCGTCTGCGTCAATTATGTGGGGCGAAAGCGACC CCTGCACAACGTCGTCTATCGGCCCGGCGAGAATCCCGTAACACAGCGTC TTCCAGCAGTACTAAGCAGGATCGGAGTAATTCTTGCAAGTCCTTTGGCA AGCGCCGCTGCCACGCCGGCCATGTCGATGATGGGCGGGGCCACGCCCAT GTCCAGTGGTACCCCGGCCGCCTCATCCTCGGTGGCCACGCCCGGTACCC CAAGGATCACCGATCCGGAGGAGTTCTTCGGCGGCGGCATGCGTTGGCAG GAGGCCCATGGCGGAATCATTGGAGCTGCTGTCCAGAATTTACGGGCACG TTCGATAAAACGTAAGGCGGCCAGAAGTCCATCCACTTCCATATCGCCCC ATCCCAGTGGGCGACCCACTGAGCATATCTACGAAGAGCCCGGTGGATCC ACATCCGGTGTCACAAGTACGAAAGTAAAGTTCAAGGACGAGCTGAAGGA GGAGCAACCGGAGGAGGCGGAGTCCAGCACCAAACTACGACGATCGGTGG CCACCAGTACACCGGCTTTGGTTGTAAGGATCGAGGCTGAGATCGATCCG GAGGCGGAAGACAAGCCCATCCAGGATATGGAAATGACAGAACGTCAGTT GTCCTTGCCGTTGAAACCGCCGCGTCGCAAGGCATCGCGCTCCAATTCAC CAGCCTCGGTTTACAGCGATGCATTCGAGAATGTGGAAGCTACACCCGGC GAAAAGCGTCAAAACGCCGGGGCACCGAACGAAATTGTGGCATGCACCAC CTGCGGCGGCAGCAACAGTCCGTGCACCCATTCGGCAAATAATGGATGTG CCACGGAGACCTGCTTCGTTCAAGTGCGGAAAAAGGAGCCACCTCATCCG ATTCGAGTGGCCAAGACGATCGATGTCATCGCTAGAATTACATTTCCAAC TGCTTATGCCATTTTTCTGATATTCTTCTTTGTACACTATAAAGGATTTT CGTAAAATTAAGCAAAAAAAACACTACAAGTAAAGCATAAACATACATAC ATATATAGATACTTGAACACGCTAAATTGCCGAAGCAAAGCCAGCAAATT CGTAATGTAATTCGTAGAGAAACATGCAGACCGACATGAGAACTCGTTTG CTAAATTCTAGGGCCTTGCAAAGTCATCTAATTTTAATGGAACAAAGGGA AACACAAAGTACATCTAATTATTCATTAATGATTATTTAAATGGCAACAA CATGACAAAACCAGTGATAAAAACGTCAAAATGAAAACATTAGTTTAAAC TGAGTTGTTAATGGGGAAAAAAGAAAAATGAATAAGTTGTTAATAATTAA TATTTACGAAAGTTAAATTTATGCAAATGAGCAAACATACGAATGAAACA TTTTCGACTGCCTTTTTTAAAAATAGTAGACAAACAAACCAAAAAAGCAA CAAAAAAAGAACTTTAAATTAAATTTGCAAATTTTTGCATATGCTCGAAA ATGCATTAGTTAATTATACCAACCAAAGAAACACTGTCTAGCAATTGTAA TATATAATATTTAAACAATTTAATAAGCAAACAAATTAATGCTGAAAGTA CCAAAAAAGAACACGATCCAAGAAGATAAAAAGACCTAGCCTATAACTAT GAAATATGAAACGCAAACCAAACAGCTTTAAGGCTTTACCTATTTGAGTA GTCGAAATGATGCAAACCTGTTTATACACACATATATACATAGATGTTAT ATATTTACAAACAGATCTAGTCGAATATTATGAAATTAAAACCCAGTTTT GTTCAATTCAATTCGATGAGTTGAGATGCCTCCGCATATGTCAAAGATTA TGAAACAAAACACACACAAATTGTTACTCATCACACAGATTTTTACGTTA CGCTTTATTGTATATACTATTGATTTAATGTTTATTTAAACTCTGTTTAT TTTTTTCAATAAATGTTCGATATATAAACCAGCCTTGATTTTAACGCATC GCATAAATTCACGGAAATGAAACCGCCGCAAAGTAGACCACAATTAAAGC TTTCCTAAACTAAGATTCGGGTGAAATAAAATAAAATCGCATGAAATAAA CACATTTTATAATTATAGAAGGTAACAATGAAAAATAGTTTACACAAAAC AAATTTGTACACCTTCAGAGATTCATTCATTTCATTTGATCCATCAACGC CTTTTTAAGTAGCAGCAGGAATTGCCTAAAAACTTTTATTAAAATACATA TCAAAGCTCATAGAAGAAACATAAACGAAGCTAACTAAAATATTTACAAA AAAATATATGACACGAATCTTTATGAAACTCTCATAAGTAGCTATGAAGT ATATGCCAACCCAACTATAAACTCACAAAACTAACACCCAAGTATTTTAG ATAAAATGTATGTCCACAAATGCTGGCAAGCGTTTGTTGGCCAACAAAGA AATAAATATAAAACCCAAAAAAGCACGATCTAATTCAAAAAAAAAAAAAA AACTTAAACCAAACCTAAACCAAATTTAAACCTTGTGATAATGAACACAA ACAAAAATCCTAAATTTAAAAACAAACCTTTGCATACGAAGTTTTATTGC AATTAATTGAGAGCAGGTTATTGAGGGCCACGGTTACCAATTGTTTAAAT AATATTACCTATATAGAACACAATATGCGTATACACGAAATGCTTTTTGC AAATAAATACATTTATGAATTTAGAGATTTGTAGATTTTTGGGAAATTTT CTTTTCGCCATTTTGCAAGCTCTTCGCAGTTAATTCTCATTTAGCAAAAA AAAAATATATTTAACTAAATAGCAACTACGAGATGGAAAACCCAAAGACA AGGACAATCTTTTTGCAATTTACAAAAACGAAAAAGTTAATCTGAGTAAA AGGAAATGCTAGGTCATCTTTCAAACAAGCAATGCCGAATAATTCAGAAT CCTTTTTGTATAATTAGCTGCTTATATAGAACACAAAAAAAAACTGAACT CCAAATTCATCGCGTCCAATGACAAATGTTTTTGTTGCGCAAATATAGTC AAGGGTAAGAAATGTGAGTGGAATTTGCTGAATATGTGGCCAATATAAGG AATGTACAAATTAAATACGATAAAGATGGACCCTAAGAAACTATTATTCG ATTCGTTCTTTGAACAGCTTAACCATGTAACTCCGTTAAATGTTAGTTAG CAATCGATTTGAGTGAAGGTGCCTTCTTTGAGAGAATTAAAAACTTATTG ATTGCGTAGATGGTTTCAGGCGAAACACAGTTTTTGTTATTACGAATGGA AACCCGACGAATGTATGTATGTGCCCTATAAGGATTTCTGTTTGGGATTG TTTTTAACTCCTTACAAGCTAAACTGCTGATAAAATGAAGTAGAAGCTAA TCCAAAGACCAGTAACATTACAAAAAATGTATTTAAATAGATCTAAAGCA AAGCCATAAAAGTTCACACTTGAAAAAGCATTAATGAAATTAGCAAACAA GAAAATTCTAAAAAAAAAGAGATTTGAAACGCATCATGAAAATCTGTTAC ATTTTATCATATTTGATGGGTGCAAAACGCAGTTAAAAACACTTTTTAAA TTGTCATTACTCCAAAGCTTTATAATTTGTAAATGCTATAAACGAAATGT AAATACTAATGTATCAAGACAGTTAGCAGTTAATTCATTTTATCGAATAA CTTTAAACTAATTTCTTTATAAACAATATTTGCTAAAACCATGACAGTCC AACTGAACTGTTTGCTAGAGATTTGTTAAAAAATTATATATCTGAAATAC GTTTAGAAAAGAAAAAAAAAAAGTTAAGCCATTGGGACAATTTGTGTTGC CCAATTTATTTCACATACGAGTAGATTTCTTAAAGATCAATTACAAAAAA CCGAAGTCCCCACAATGCTACCAAACGTAATAATTATAATAACAACTTTT TTATAATGCACAATATTGAGCATAATAAAACCGATTTATTAACAATGCAT TCCCAAAACGAACATCATGTAAATACACCAAATACATAAAACAACTCAAA AACTAGTTATAAACGAGTAAATATTTGAAAAAAAAAAAAACGATAAATTG GAAAACAACAAACGAACAACCAGAAAACTAATAAACAAAGCAGCTTCGCA TTAATAAAGATCGTCTCAATCAGAAAACG
Other Products of this Gene
Other Transcripts
	Name FlyBase ID Length (nt) pHCl-RC FBtr0334972 3361 pHCl-RD FBtr0334973 3164 pHCl-RE FBtr0334974 3239 pHCl-RF FBtr0334975 3293 pHCl-RG FBtr0334976 3687 pHCl-RH FBtr0334971 3247 pHCl-RI FBtr0334970 3223 pHCl-RJ FBtr0334977 3277 pHCl-RK FBtr0334978 3199 pHCl-RL FBtr0334979 5941 pHCl-RM FBtr0334980 3818 pHCl-RO FBtr0334982 3743 pHCl-RP FBtr0334983 3218
Polypeptides
Derived from THIS transcript	Name FlyBase ID Length (aa) pHCl-PN FBpp0306994 978
Derived from OTHER transcripts	Name FlyBase ID Length (aa) pHCl-PC FBpp0306985 637 pHCl-PD FBpp0306986 737 pHCl-PE FBpp0306987 762 pHCl-PF FBpp0306988 779 pHCl-PG FBpp0306989 681 pHCl-PH FBpp0306984 762 pHCl-PI FBpp0306983 754 pHCl-PJ FBpp0306990 772 pHCl-PK FBpp0306991 746 pHCl-PL FBpp0306992 747 pHCl-PM FBpp0306993 954 pHCl-PO FBpp0306995 929 pHCl-PP FBpp0306996 754
Comments
	Extended 3' UTR based on RNA-Seq and/or EST data.
External Crossreferences
	RefSeq - An integrated, non-redundant set of sequences • NM_001274969
Synonyms
	CG44099-RN pHCl-RN
References ( 0 )
	No references are recorded in FlyBase at present.